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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
34.9
nTPM
HPA Brain:
35.5
nTPM
GTEx:
34.9
nTPM
FANTOM5:
29.3
Scaled Tags Per Million
Pig:
21.8
nTPM
Mouse:
29.7
nTPM
Allen mouse:
0.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA021007
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 25.8
1898
Male, age 80, left hemisphere
31.7
2621
Female, age 67, right hemisphere
28.0
2529
Female, age 94, left hemisphere
27.4
1855
Male, age 76, left hemisphere
26.2
2148
Female, age 91, left hemisphere
20.9
1911
Female, age 85, right hemisphere
20.5
Dentate gyrus nTPM: 26.1
2010
Male, age 76, both hemispheres
28.5
2530
Female, age 94, left hemisphere
28.4
1927
Female, age 91, both hemispheres
26.9
2246
Female, age 85, both hemispheres
26.9
2528
Male, age 74, both hemispheres
23.5
2531
Female, age 67, both hemispheres
22.5
Entorhinal gyrus nTPM: 29.4
2764
Male, age 80, right hemisphere
39.3
1787
Male, age 76, left hemisphere
33.0
1938
Female, age 85, left hemisphere
31.6
2613
Female, age 94, left hemisphere
26.0
2117
Female, age 91, right hemisphere
24.4
2686
Male, age 75, right hemisphere
22.0
Hippocampus, CA1 nTPM: 28.8
2749
Male, age 80, left hemisphere
41.6
2527
Male, age 74, both hemispheres
30.0
1873
Female, age 85, both hemispheres
25.9
2082
Female, age 91, right hemisphere
23.4
2045
Male, age 76, both hemispheres
23.2
Hippocampus, CA2 nTPM: 26.1
1892
Male, age 76, both hemispheres
30.2
2249
Male, age 74, both hemispheres
29.5
1963
Male, age 80, left hemisphere
27.3
2437
Female, age 94, left hemisphere
25.8
1940
Female, age 85, left hemisphere
21.9
2113
Female, age 91, right hemisphere
21.8
Hippocampus, CA3 nTPM: 26.4
2436
Male, age 74, both hemispheres
28.9
1867
Male, age 76, both hemispheres
28.6
2620
Female, age 94, left hemisphere
28.2
2137
Male, age 80, left hemisphere
27.2
1891
Female, age 85, both hemispheres
23.2
2861
Female, age 67, both hemispheres
22.4
Parahippocampal cortex nTPM: 29.5
1850
Male, age 80, both hemispheres
37.4
2532
Female, age 72, left hemisphere
31.5
1990
Female, age 91, right hemisphere
31.3
1933
Female, age 85, both hemispheres
30.8
2245
Female, age 91, both hemispheres
30.4
2250
Female, age 67, right hemisphere
30.0
2018
Male, age 76, both hemispheres
26.9
2622
Female, age 67, right hemisphere
25.9
2693
Female, age 94, both hemispheres
25.8
2692
Male, age 74, both hemispheres
25.1
Perirhinal gyrus nTPM: 35.5
1847
Female, age 91, left hemisphere
40.3
1794
Male, age 80, right hemisphere
40.1
1841
Female, age 85, right hemisphere
37.6
2848
Male, age 76, right hemisphere
30.0
2521
Female, age 94, right hemisphere
29.3
Subiculum nTPM: 26.4
1977
Female, age 85, both hemispheres
30.7
2619
Male, age 74, both hemispheres
29.9
2438
Female, age 94, left hemisphere
28.4
1901
Male, age 80, both hemispheres
26.1
2042
Male, age 76, both hemispheres
24.6
2729
Female, age 91, right hemisphere
18.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 34.9
Samples: 197
Max nTPM: 89.6
Min nTPM: 10.2
Std nTPM: 11.6
Median nTPM: 32.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
89.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
68.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
65.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
63.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
63.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
63.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
60.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
60.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
59.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
59.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
56.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
55.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
54.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
53.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
53.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
53.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
52.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
52.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
50.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
49.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
49.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
49.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
48.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
48.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
47.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
47.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
47.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
46.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
46.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
46.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
46.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
46.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
46.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
45.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
45.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
45.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
45.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
44.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
44.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
44.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
43.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
43.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
42.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
42.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
42.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
42.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
42.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
42.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
41.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
41.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
41.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
41.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
40.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
40.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
39.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
39.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
39.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
39.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
39.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
39.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
39.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
39.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
39.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
38.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
38.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
38.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
38.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
38.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
38.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
38.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
38.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
38.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
38.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
37.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
37.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
37.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
36.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
36.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
35.9
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
35.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
35.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
35.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
35.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
35.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
35.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
34.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
34.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
34.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
34.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
34.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
33.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
33.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
33.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
33.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
33.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
32.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
32.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
32.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
32.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
32.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
32.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
31.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
31.9
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
31.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
31.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
31.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
31.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
31.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
30.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
30.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
30.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
30.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
30.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
30.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
30.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
30.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
29.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
29.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
29.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
29.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
29.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
29.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
29.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
29.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
29.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
28.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
28.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
28.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
28.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
28.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
28.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
28.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
28.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
27.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
27.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
27.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
27.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
27.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
27.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
26.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
26.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
26.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
26.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
26.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
26.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
26.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
26.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
26.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
26.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
26.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
25.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
25.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
25.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
25.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
25.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
25.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
25.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
25.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
24.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
24.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
24.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
24.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
24.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
24.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
24.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
24.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
24.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
24.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
24.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
23.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
23.8
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
23.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
23.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
23.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
23.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
22.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
22.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
22.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
22.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
22.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
22.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
22.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
22.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
22.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
21.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
21.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
21.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
21.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
21.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
21.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
20.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
20.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
20.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
17.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
15.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
12.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
10.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 27.3
Samples: 4
Max nTPM: 30.3
Min nTPM: 25.2
Sample A
Male
25.2
Sample B
Male
28.3
Sample C
Female
25.5
Sample D
Female
30.3
Hippocampal formation nTPM: 29.7
Samples: 4
Max nTPM: 32.2
Min nTPM: 27.5
Sample A
Male
31.4
Sample B
Male
27.8
Sample C
Female
27.5
Sample D
Female
32.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.