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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Ventrolateral medulla, A1-C1 cell groups nTPM: 99.7
1986
Male, age 76, both hemispheres
121.7
2741
Female, age 85, both hemispheres
115.5
2180
Male, age 61, both hemispheres
107.3
2302
Female, age 91, both hemispheres
84.9
2118
Male, age 80, both hemispheres
69.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 105.6
2449
Male, age 74, both hemispheres
156.2
1959
Male, age 76, both hemispheres
149.5
2161
Male, age 80, both hemispheres
116.7
2840
Female, age 85, both hemispheres
96.5
2359
Male, age 61, both hemispheres
77.0
2456
Female, age 91, both hemispheres
37.8
PONS AND MEDULLA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
195.2
Mouse sample
Sample description
nTPM
Pons and medulla nTPM: 195.2
Samples: 4
Max nTPM: 205.7
Min nTPM: 183.9
Sample A
Male
198.9
Sample B
Male
183.9
Sample C
Female
205.7
Sample D
Female
192.2
PONS AND MEDULLA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.