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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
65.5
nTPM
HPA Brain:
82.9
nTPM
GTEx:
65.5
nTPM
FANTOM5:
1.7
Scaled Tags Per Million
Pig:
219.9
nTPM
Mouse:
216.1
nTPM
Allen mouse:
10.7
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
82.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 50.8
1827
Male, age 72, unknown
95.6
1870
Female, age 42, unknown
66.7
2586
Male, age 75, left hemisphere
65.7
2828
Female, age 72, unknown
64.1
2411
Female, age 72, unknown
62.9
2219
Male, age 76, both hemispheres
41.0
2666
Male, age 74, left hemisphere
38.8
1830
Male, age 51, unknown
33.7
1833
Male, age 53, unknown
29.9
2019
Male, age 18, unknown
10.0
Dorsal raphe nucleus nTPM: 36.1
2298
Female, age 72, unknown
57.0
2750
Male, age 76, both hemispheres
41.5
2016
Female, age 72, unknown
38.1
2047
Male, age 72, unknown
27.1
1828
Male, age 53, unknown
16.9
Inferior colliculus nTPM: 39.7
2849
Male, age 72, unknown
53.6
1848
Female, age 42, unknown
43.8
2097
Female, age 72, unknown
35.0
1890
Male, age 53, unknown
26.4
Median raphe nucleus nTPM: 49.6
2220
Male, age 76, midline
49.6
Periaquaductal grey, anterior nTPM: 68.4
1795
Male, age 51, unknown
106.4
2502
Female, age 75, unknown
71.3
1947
Male, age 18, unknown
27.4
Periaquaductal grey, dorsal nTPM: 61.4
2850
Male, age 76, both hemispheres
73.8
1831
Male, age 72, unknown
67.1
1840
Male, age 53, unknown
62.7
2464
Female, age 72, unknown
42.2
Periaquaductal grey, lateral nTPM: 82.9
2053
Male, age 18, unknown
153.5
2140
Male, age 76, both hemispheres
60.7
2272
Male, age 74, both hemispheres
34.3
Pretectal area nTPM: 58.3
2224
Female, age 72, unknown
185.7
2825
Male, age 18, unknown
145.0
2667
Female, age 75, unknown
57.3
2316
Male, age 76, right hemisphere
53.9
2407
Male, age 75, both hemispheres
37.1
1816
Male, age 51, unknown
35.1
2007
Male, age 72, unknown
30.7
2273
Male, age 74, both hemispheres
27.1
1815
Male, age 53, unknown
27.0
1944
Female, age 72, unknown
25.8
1817
Female, age 42, unknown
16.6
Red nucleus nTPM: 15.2
2584
Male, age 75, left hemisphere
53.9
2227
Male, age 72, unknown
17.7
2769
Male, age 72, unknown
17.1
1821
Female, age 72, unknown
16.7
2725
Female, age 75, unknown
13.3
2823
Male, age 76, right hemisphere
12.3
1865
Male, age 51, unknown
10.4
1954
Female, age 42, unknown
10.0
1904
Male, age 53, unknown
8.4
2503
Female, age 72, unknown
8.4
2588
Male, age 74, left hemisphere
7.6
2785
Male, age 18, unknown
6.2
Substantia nigra nTPM: 22.6
1941
Male, age 53, unknown
68.4
1889
Female, age 72, unknown
43.4
2241
Male, age 72, unknown
33.9
2590
Female, age 75, unknown
17.1
2699
Male, age 18, unknown
12.0
1916
Female, age 42, unknown
11.4
1851
Male, age 51, unknown
11.3
2583
Male, age 75, right hemisphere
11.2
2665
Male, age 74, both hemispheres
10.3
2409
Female, age 72, unknown
6.7
Superior colliculus nTPM: 39.0
2261
Male, age 18, unknown
97.5
1839
Male, age 51, unknown
51.1
1895
Male, age 76, right hemisphere
49.2
1796
Male, age 53, unknown
48.5
2664
Male, age 75, both hemispheres
45.4
2587
Male, age 74, left hemisphere
40.6
1913
Female, age 42, unknown
22.2
2668
Female, age 75, unknown
18.0
2087
Female, age 72, unknown
14.3
1995
Male, age 72, unknown
3.7
Ventral tegmental area nTPM: 37.7
1915
Female, age 42, unknown
60.3
2021
Male, age 53, unknown
52.8
1942
Male, age 51, unknown
33.9
2218
Male, age 76, both hemispheres
32.6
2223
Female, age 72, unknown
24.4
2410
Female, age 72, unknown
22.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
65.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 65.5
Samples: 139
Max nTPM: 941.8
Min nTPM: 0.9
Std nTPM: 113.9
Median nTPM: 34.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
941.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
560.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
480.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
404.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
310.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
276.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
246.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
236.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
222.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
189.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
186.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
186.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
182.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
156.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
153.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
136.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
131.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
120.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
120.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
118.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
117.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
113.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
105.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
100.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
92.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
87.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
85.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
83.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
76.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
75.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
69.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
63.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
61.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
61.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
61.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
57.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
55.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
55.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
55.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
54.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
52.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
51.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
50.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
48.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
48.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
46.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
46.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
45.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
45.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
45.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
44.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
44.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
44.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
44.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
42.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
42.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
42.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
41.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
41.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
40.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
39.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
38.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
38.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
38.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
38.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
37.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
37.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
36.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
35.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
34.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
33.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
33.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
31.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
31.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
30.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
30.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
30.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
30.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
29.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
27.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
26.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
26.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
25.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
21.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
20.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
20.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
20.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
19.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
18.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
18.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
17.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
17.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
17.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
16.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
16.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
13.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
12.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
12.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
12.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
12.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
11.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
11.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
11.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
10.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
10.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
10.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
10.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
9.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
9.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
9.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
9.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
9.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
8.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
8.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
8.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
7.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
7.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
5.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
5.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
5.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
5.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
5.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
5.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
5.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
4.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
4.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
4.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
4.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
4.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
4.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
3.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
2.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
2.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
216.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 216.1
Samples: 4
Max nTPM: 222.2
Min nTPM: 208.7
Sample A
Male
221.2
Sample B
Male
208.7
Sample C
Female
212.4
Sample D
Female
222.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.