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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
21.4
nTPM
HPA Brain:
21.0
nTPM
GTEx:
21.4
nTPM
FANTOM5:
49.5
Scaled Tags Per Million
Pig:
49.8
nTPM
Mouse:
46.9
nTPM
Allen mouse:
4.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 8.2
2529
Female, age 94, left hemisphere
15.2
1911
Female, age 85, right hemisphere
9.2
2621
Female, age 67, right hemisphere
8.8
1855
Male, age 76, left hemisphere
5.6
1898
Male, age 80, left hemisphere
5.4
2148
Female, age 91, left hemisphere
5.1
Dentate gyrus nTPM: 7.4
2531
Female, age 67, both hemispheres
10.3
2528
Male, age 74, both hemispheres
9.7
1927
Female, age 91, both hemispheres
9.1
2246
Female, age 85, both hemispheres
7.0
2010
Male, age 76, both hemispheres
5.2
2530
Female, age 94, left hemisphere
2.9
Entorhinal gyrus nTPM: 16.1
1938
Female, age 85, left hemisphere
21.3
2613
Female, age 94, left hemisphere
20.8
1787
Male, age 76, left hemisphere
15.1
2764
Male, age 80, right hemisphere
14.0
2686
Male, age 75, right hemisphere
13.6
2117
Female, age 91, right hemisphere
11.6
Hippocampus, CA1 nTPM: 6.7
2045
Male, age 76, both hemispheres
7.9
2082
Female, age 91, right hemisphere
7.4
2527
Male, age 74, both hemispheres
7.3
1873
Female, age 85, both hemispheres
7.1
2749
Male, age 80, left hemisphere
3.8
Hippocampus, CA2 nTPM: 6.3
1892
Male, age 76, both hemispheres
9.9
2437
Female, age 94, left hemisphere
9.8
2113
Female, age 91, right hemisphere
7.5
1963
Male, age 80, left hemisphere
4.3
1940
Female, age 85, left hemisphere
3.3
2249
Male, age 74, both hemispheres
2.8
Hippocampus, CA3 nTPM: 6.7
1867
Male, age 76, both hemispheres
9.4
1891
Female, age 85, both hemispheres
9.3
2137
Male, age 80, left hemisphere
6.0
2861
Female, age 67, both hemispheres
5.6
2436
Male, age 74, both hemispheres
5.4
2620
Female, age 94, left hemisphere
4.5
Parahippocampal cortex nTPM: 15.9
2250
Female, age 67, right hemisphere
30.8
1933
Female, age 85, both hemispheres
27.6
1990
Female, age 91, right hemisphere
20.6
2693
Female, age 94, both hemispheres
18.7
2018
Male, age 76, both hemispheres
15.9
2245
Female, age 91, both hemispheres
13.4
2692
Male, age 74, both hemispheres
11.6
1850
Male, age 80, both hemispheres
9.3
2532
Female, age 72, left hemisphere
5.8
2622
Female, age 67, right hemisphere
5.7
Perirhinal gyrus nTPM: 21.0
1847
Female, age 91, left hemisphere
44.3
2521
Female, age 94, right hemisphere
23.9
1794
Male, age 80, right hemisphere
14.1
2848
Male, age 76, right hemisphere
12.3
1841
Female, age 85, right hemisphere
10.3
Subiculum nTPM: 10.5
1977
Female, age 85, both hemispheres
24.0
2619
Male, age 74, both hemispheres
19.2
2042
Male, age 76, both hemispheres
5.7
1901
Male, age 80, both hemispheres
4.9
2438
Female, age 94, left hemisphere
4.6
2729
Female, age 91, right hemisphere
4.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 21.4
Samples: 197
Max nTPM: 115.6
Min nTPM: 0.6
Std nTPM: 20.4
Median nTPM: 15.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
115.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
100.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
95.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
92.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
92.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
87.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
78.1
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
70.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
70.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
69.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
61.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
60.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
59.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
55.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
54.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
54.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
54.6
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
50.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
50.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
49.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
48.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
46.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
45.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
43.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
40.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
39.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
36.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
35.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
35.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
34.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
34.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
33.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
33.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
32.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
32.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
31.7
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
31.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
30.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
30.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
30.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
29.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
29.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
29.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
28.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
28.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
28.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
28.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
26.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
26.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
26.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
25.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
25.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
25.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
25.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
25.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
24.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
24.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
24.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
24.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
24.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
23.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
23.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
22.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
22.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
22.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
22.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
21.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
21.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
21.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
21.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
21.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
21.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
19.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
19.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
19.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
19.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
19.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
19.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
18.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
18.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
18.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
18.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
17.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
17.9
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
17.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
17.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
17.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
17.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
17.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
17.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
16.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
16.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
16.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
15.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
15.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
15.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
15.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
15.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
15.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
14.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
14.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
14.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
14.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
14.2
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
14.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
14.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
14.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
14.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
14.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
13.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
13.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
13.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
13.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
13.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
13.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
12.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
12.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
12.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
12.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
11.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
11.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
11.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
11.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
11.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
11.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
11.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
11.1
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
11.0
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
10.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
10.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
10.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
10.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
10.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
10.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
10.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
10.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
10.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
9.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
9.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
9.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
9.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
9.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
9.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
8.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
8.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
8.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
8.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
8.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
8.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
7.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
7.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
7.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
7.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
6.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
6.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
6.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
6.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
6.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
6.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
6.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
5.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
5.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
5.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
5.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
5.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
4.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
4.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
4.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
4.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
4.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
4.6
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
4.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
4.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
4.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
4.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
3.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
3.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
3.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
3.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
3.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
3.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
3.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
3.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
3.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
3.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
2.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
2.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
2.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
2.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
2.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
2.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
2.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
2.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
2.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
1.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
1.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
0.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 34.5
Samples: 4
Max nTPM: 55.5
Min nTPM: 22.4
Sample A
Male
23.1
Sample B
Male
22.4
Sample C
Female
55.5
Sample D
Female
37.0
Hippocampal formation nTPM: 47.0
Samples: 4
Max nTPM: 67.5
Min nTPM: 16.9
Sample A
Male
51.8
Sample B
Male
51.7
Sample C
Female
16.9
Sample D
Female
67.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.