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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
445.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 302.3
2301
Female, age 85, both hemispheres
370.3
2090
Male, age 80, both hemispheres
331.4
1984
Male, age 76, both hemispheres
315.3
2188
Female, age 91, both hemispheres
192.2
Dorsal cochlear nucleus nTPM: 392.2
2370
Male, age 61, both hemispheres
586.3
2058
Male, age 76, both hemispheres
400.4
2378
Male, age 80, both hemispheres
357.3
2802
Male, age 74, right hemisphere
328.3
2187
Female, age 91, both hemispheres
288.6
Dorsal tegmental nucleus nTPM: 401.1
1936
Male, age 76, left hemisphere
479.5
2083
Male, age 80, both hemispheres
439.7
2326
Male, age 74, both hemispheres
399.6
2358
Male, age 61, both hemispheres
285.7
Dorsolateral tegmental area nTPM: 445.5
2360
Male, age 74, both hemispheres
770.5
2751
Female, age 85, both hemispheres
443.3
2654
Male, age 80, both hemispheres
426.1
2141
Male, age 76, both hemispheres
357.4
2337
Male, age 61, both hemispheres
230.4
Kolliker-Fuse nucleus nTPM: 418.7
2315
Male, age 76, right hemisphere
811.8
2163
Male, age 80, both hemispheres
308.6
2793
Female, age 91, left hemisphere
135.7
Lateral lemniscal nuclei nTPM: 217.1
2746
Female, age 85, left hemisphere
299.5
2169
Male, age 76, both hemispheres
270.8
2036
Male, age 80, both hemispheres
237.0
2453
Male, age 74, right hemisphere
152.1
2320
Female, age 91, left hemisphere
126.3
Lateral parabrachial nucleus nTPM: 402.7
2139
Female, age 85, right hemisphere
574.9
2792
Male, age 76, both hemispheres
490.5
2013
Male, age 80, both hemispheres
368.4
2790
Male, age 61, both hemispheres
177.0
Lateral vestibular nucleus nTPM: 376.8
2311
Male, age 80, both hemispheres
383.2
2184
Male, age 76, both hemispheres
370.4
Locus coeruleus nTPM: 383.6
2317
Female, age 72, unknown
550.5
2788
Male, age 74, unknown
479.7
2014
Male, age 55, unknown
406.1
2123
Female, age 91, both hemispheres
388.3
1980
Male, age 76, both hemispheres
387.1
2162
Male, age 80, both hemispheres
287.1
2720
Male, age 74, both hemispheres
186.5
Medial parabrachial nucleus nTPM: 322.0
2463
Female, age 85, right hemisphere
390.4
2786
Male, age 76, both hemispheres
354.0
2156
Male, age 61, both hemispheres
328.6
2170
Female, age 91, both hemispheres
301.6
2854
Male, age 80, both hemispheres
235.6
Medial periolivary nuclei nTPM: 311.8
2791
Male, age 74, right hemisphere
635.9
2063
Male, age 76, both hemispheres
324.7
2171
Female, age 85, both hemispheres
274.2
2081
Male, age 80, both hemispheres
180.9
2458
Female, age 91, both hemispheres
143.1
Motor facial nucleus nTPM: 256.3
2365
Male, age 74, right hemisphere
395.2
2062
Male, age 76, both hemispheres
362.2
2126
Male, age 61, both hemispheres
271.3
2795
Female, age 91, both hemispheres
251.0
2697
Female, age 85, both hemispheres
156.8
2327
Male, age 80, both hemispheres
101.4
Motor trigeminal nucleus nTPM: 238.0
2309
Male, age 76, both hemispheres
383.3
2335
Male, age 61, both hemispheres
352.6
2079
Male, age 80, both hemispheres
177.9
2321
Female, age 91, both hemispheres
151.9
2560
Male, age 74, both hemispheres
124.4
Nuclei of the trapezoid body nTPM: 244.0
1983
Male, age 76, both hemispheres
336.5
2735
Female, age 85, both hemispheres
283.4
2368
Female, age 91, both hemispheres
230.9
2159
Male, age 61, both hemispheres
200.5
2166
Male, age 80, both hemispheres
168.9
Nucleus raphe magnus nTPM: 230.4
2455
Male, age 74, both hemispheres
438.8
2051
Male, age 76, both hemispheres
307.3
2160
Male, age 61, both hemispheres
211.1
2328
Male, age 80, both hemispheres
176.5
2172
Female, age 85, both hemispheres
127.7
2459
Female, age 91, both hemispheres
120.8
Paramedian reticular nucleus nTPM: 349.7
2057
Male, age 80, both hemispheres
415.6
2052
Male, age 76, both hemispheres
383.7
2313
Male, age 61, both hemispheres
346.7
2050
Female, age 85, both hemispheres
252.9
Pedunculopontine tegmental nucleus nTPM: 383.4
1921
Female, age 85, both hemispheres
441.7
2334
Male, age 80, both hemispheres
409.2
2338
Male, age 61, both hemispheres
299.2
Pontine nuclei nTPM: 192.2
1863
Male, age 55, unknown
305.3
1968
Male, age 76, left hemisphere
255.6
2115
Male, age 80, left hemisphere
196.8
2787
Female, age 85, both hemispheres
195.2
2109
Female, age 72, unknown
187.7
2727
Male, age 61, right hemisphere
162.0
2319
Female, age 91, both hemispheres
160.6
2454
Male, age 74, left hemisphere
74.6
Pontine raphe nucleus nTPM: 301.0
2853
Male, age 76, midline
347.5
2122
Female, age 85, midline
254.5
Posteroventral cochlear nucleus nTPM: 335.1
2371
Male, age 61, both hemispheres
559.0
2752
Female, age 85, both hemispheres
358.0
2070
Male, age 76, both hemispheres
301.2
2341
Male, age 80, both hemispheres
280.9
2135
Female, age 91, both hemispheres
176.8
Principal sensory trigeminal nucleus nTPM: 232.8
2324
Male, age 76, both hemispheres
421.9
2158
Male, age 61, both hemispheres
205.6
2008
Male, age 80, left hemisphere
186.3
2367
Female, age 91, left hemisphere
117.4
Reticular pontine nucleus, caudal nTPM: 181.0
2092
Male, age 76, both hemispheres
382.5
2457
Female, age 91, both hemispheres
122.0
2559
Male, age 74, both hemispheres
110.3
2332
Male, age 80, right hemisphere
109.2
Reticular pontine nucleus, oral nTPM: 272.3
1939
Male, age 80, both hemispheres
466.8
2167
Male, age 76, both hemispheres
358.0
2012
Female, age 85, both hemispheres
340.1
2366
Female, age 91, both hemispheres
126.2
2361
Male, age 74, both hemispheres
70.6
Reticulotegmental nucleus nTPM: 263.4
2325
Male, age 76, both hemispheres
338.1
2333
Male, age 80, both hemispheres
298.2
2322
Female, age 91, both hemispheres
242.3
2452
Male, age 74, both hemispheres
175.0
Spinal trigeminal nucleus, oral nTPM: 279.5
2737
Female, age 85, both hemispheres
340.0
1978
Male, age 76, both hemispheres
309.9
2164
Male, age 80, both hemispheres
188.4
Subcoeruleus area nTPM: 317.0
2369
Female, age 85, left hemisphere
441.4
1958
Male, age 80, both hemispheres
347.0
2323
Female, age 91, left hemisphere
294.1
2451
Male, age 74, both hemispheres
260.6
2089
Male, age 76, left hemisphere
241.9
Superior olive nTPM: 282.0
2364
Male, age 74, right hemisphere
644.3
2020
Male, age 76, both hemispheres
279.2
1875
Female, age 85, both hemispheres
201.6
2561
Female, age 91, both hemispheres
145.1
2329
Male, age 80, right hemisphere
139.6
Ventral periolivary nuclei nTPM: 250.8
2130
Female, age 85, both hemispheres
318.9
2023
Male, age 76, both hemispheres
295.5
2165
Male, age 80, both hemispheres
237.0
2794
Female, age 91, left hemisphere
151.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 269.7
2359
Male, age 61, both hemispheres
389.4
2840
Female, age 85, both hemispheres
296.1
1959
Male, age 76, both hemispheres
294.3
2449
Male, age 74, both hemispheres
240.7
2161
Male, age 80, both hemispheres
199.4
2456
Female, age 91, both hemispheres
198.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
755.6
Pig sample
Sample description
nTPM
Pons nTPM: 755.6
Samples: 4
Max nTPM: 929.0
Min nTPM: 653.7
Sample A
Female
657.1
Sample B
Female
653.7
Sample C
Male
782.6
Sample D
Male
929.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.