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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
180.0
nTPM
HPA Brain:
727.2
nTPM
GTEx:
180.0
nTPM
FANTOM5:
721.6
Scaled Tags Per Million
Pig:
975.3
nTPM
Mouse:
219.3
nTPM
Allen mouse:
4.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
727.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 396.1
2828
Female, age 72, unknown
620.7
2586
Male, age 75, left hemisphere
532.0
1870
Female, age 42, unknown
449.0
2411
Female, age 72, unknown
419.9
1827
Male, age 72, unknown
415.8
1833
Male, age 53, unknown
384.5
1830
Male, age 51, unknown
343.9
2666
Male, age 74, left hemisphere
276.5
2019
Male, age 18, unknown
260.7
2219
Male, age 76, both hemispheres
257.8
Dorsal raphe nucleus nTPM: 662.3
2298
Female, age 72, unknown
922.3
2016
Female, age 72, unknown
815.4
1828
Male, age 53, unknown
613.8
2047
Male, age 72, unknown
586.6
2750
Male, age 76, both hemispheres
373.7
Inferior colliculus nTPM: 551.8
2097
Female, age 72, unknown
767.6
1848
Female, age 42, unknown
553.1
1890
Male, age 53, unknown
472.4
2849
Male, age 72, unknown
414.0
Median raphe nucleus nTPM: 396.3
2220
Male, age 76, midline
396.3
Periaquaductal grey, anterior nTPM: 541.2
1795
Male, age 51, unknown
584.1
1947
Male, age 18, unknown
555.1
2502
Female, age 75, unknown
484.3
Periaquaductal grey, dorsal nTPM: 609.9
1840
Male, age 53, unknown
696.8
2850
Male, age 76, both hemispheres
605.4
2464
Female, age 72, unknown
597.6
1831
Male, age 72, unknown
539.6
Periaquaductal grey, lateral nTPM: 727.2
2053
Male, age 18, unknown
877.9
2272
Male, age 74, both hemispheres
681.2
2140
Male, age 76, both hemispheres
622.6
Pretectal area nTPM: 541.8
2273
Male, age 74, both hemispheres
971.9
2224
Female, age 72, unknown
754.8
2825
Male, age 18, unknown
607.7
2667
Female, age 75, unknown
597.5
1944
Female, age 72, unknown
529.3
2316
Male, age 76, right hemisphere
506.6
1815
Male, age 53, unknown
448.0
1817
Female, age 42, unknown
447.0
1816
Male, age 51, unknown
430.8
2407
Male, age 75, both hemispheres
365.0
2007
Male, age 72, unknown
300.7
Red nucleus nTPM: 436.7
2725
Female, age 75, unknown
568.0
2503
Female, age 72, unknown
550.6
1821
Female, age 72, unknown
543.1
2227
Male, age 72, unknown
506.4
2769
Male, age 72, unknown
502.5
1954
Female, age 42, unknown
493.4
1904
Male, age 53, unknown
460.3
2823
Male, age 76, right hemisphere
434.0
1865
Male, age 51, unknown
416.9
2584
Male, age 75, left hemisphere
260.6
2785
Male, age 18, unknown
254.8
2588
Male, age 74, left hemisphere
249.8
Substantia nigra nTPM: 480.9
2699
Male, age 18, unknown
715.9
1916
Female, age 42, unknown
611.2
2241
Male, age 72, unknown
547.2
1851
Male, age 51, unknown
541.6
2409
Female, age 72, unknown
512.6
1889
Female, age 72, unknown
478.7
1941
Male, age 53, unknown
426.4
2590
Female, age 75, unknown
379.0
2583
Male, age 75, right hemisphere
348.3
2665
Male, age 74, both hemispheres
248.2
Superior colliculus nTPM: 496.5
1995
Male, age 72, unknown
699.9
1913
Female, age 42, unknown
610.8
1796
Male, age 53, unknown
530.9
2087
Female, age 72, unknown
514.9
2261
Male, age 18, unknown
508.5
2587
Male, age 74, left hemisphere
466.3
1839
Male, age 51, unknown
450.5
2664
Male, age 75, both hemispheres
446.5
2668
Female, age 75, unknown
420.5
1895
Male, age 76, right hemisphere
316.2
Ventral tegmental area nTPM: 523.3
1942
Male, age 51, unknown
587.7
1915
Female, age 42, unknown
581.0
2410
Female, age 72, unknown
557.1
2021
Male, age 53, unknown
545.2
2223
Female, age 72, unknown
441.2
2218
Male, age 76, both hemispheres
427.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
180.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 180.0
Samples: 139
Max nTPM: 657.7
Min nTPM: 15.5
Std nTPM: 115.0
Median nTPM: 161.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
657.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
545.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
545.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
527.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
511.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
459.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
432.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
426.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
421.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
358.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
352.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
347.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
309.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
309.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
303.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
298.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
296.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
293.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
289.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
273.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
269.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
269.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
267.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
266.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
251.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
251.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
250.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
250.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
244.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
241.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
240.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
237.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
227.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
224.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
223.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
223.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
220.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
217.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
210.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
210.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
209.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
207.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
207.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
207.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
203.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
197.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
195.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
193.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
191.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
191.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
189.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
188.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
187.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
184.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
182.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
178.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
178.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
172.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
172.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
171.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
169.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
169.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
168.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
166.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
166.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
164.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
164.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
164.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
164.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
161.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
161.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
159.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
157.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
157.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
157.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
156.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
156.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
155.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
154.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
152.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
151.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
147.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
136.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
135.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
135.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
135.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
133.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
131.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
131.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
130.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
129.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
128.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
126.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
124.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
119.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
116.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
115.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
112.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
111.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
102.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
102.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
100.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
99.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
98.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
96.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
95.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
93.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
92.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
86.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
85.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
84.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
84.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
83.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
82.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
78.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
78.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
75.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
74.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
74.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
73.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
73.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
71.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
71.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
66.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
61.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
60.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
60.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
56.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
52.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
52.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
50.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
46.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
38.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
36.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
34.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
32.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
31.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
24.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
15.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
219.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 219.3
Samples: 4
Max nTPM: 222.5
Min nTPM: 213.9
Sample A
Male
219.4
Sample B
Male
221.2
Sample C
Female
213.9
Sample D
Female
222.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.