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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
554.1
Sample id
Sample description
nTPM
Amygdala nTPM: 554.1
1987
Female, age 91, left hemisphere
750.1
2517
Female, age 94, left hemisphere
611.5
2514
Male, age 75, right hemisphere
549.8
2814
Male, age 76, right hemisphere
440.7
2695
Female, age 67, right hemisphere
418.5
Basal amygdala nTPM: 409.3
2609
Male, age 75, right hemisphere
577.2
2110
Male, age 80, left hemisphere
505.1
1955
Male, age 76, both hemispheres
472.9
2243
Female, age 91, right hemisphere
403.5
2685
Female, age 94, left hemisphere
376.7
2827
Female, age 67, right hemisphere
120.3
Central amygdala nTPM: 507.1
2515
Male, age 75, right hemisphere
597.1
2826
Female, age 94, left hemisphere
587.2
2239
Male, age 80, left hemisphere
512.6
1905
Male, age 76, both hemispheres
467.4
2701
Female, age 91, right hemisphere
371.0
Corticomedial amygdala nTPM: 462.6
2242
Female, age 91, right hemisphere
579.0
2428
Male, age 75, right hemisphere
563.6
2829
Male, age 80, left hemisphere
536.9
2240
Male, age 76, both hemispheres
453.4
2429
Female, age 94, left hemisphere
450.8
2535
Female, age 67, right hemisphere
191.8
Lateral amygdala nTPM: 411.7
2516
Male, age 75, right hemisphere
580.0
2256
Male, age 80, left hemisphere
499.2
2534
Female, age 94, left hemisphere
472.1
1883
Male, age 76, both hemispheres
443.3
2255
Female, age 91, right hemisphere
343.5
2830
Female, age 67, right hemisphere
131.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
241.2
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 241.2
Samples: 152
Max nTPM: 802.7
Min nTPM: 5.9
Std nTPM: 149.7
Median nTPM: 221.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
802.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
716.7
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
604.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
586.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
578.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
565.7
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
531.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
525.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
513.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
499.2
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
482.3
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
481.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
453.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
451.2
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
447.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
428.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
428.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
427.7
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
413.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
408.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
406.3
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
399.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
387.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
380.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
379.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
376.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
374.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
372.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
371.4
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
369.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
366.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
365.7
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
349.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
346.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
343.4
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
341.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
335.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
332.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
331.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
331.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
328.3
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
323.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
320.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
319.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
318.5
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
314.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
314.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
313.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
301.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
300.6
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
298.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
296.7
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
283.5
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
282.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
280.4
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
275.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
271.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
269.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
266.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
257.5
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
256.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
255.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
252.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
251.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
249.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
243.6
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
242.4
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
240.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
237.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
230.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
229.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
227.2
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
225.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
225.0
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
223.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
221.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
220.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
213.1
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
207.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
199.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
195.1
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
186.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
184.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
183.9
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
183.4
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
183.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
182.9
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
177.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
176.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
175.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
173.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
173.1
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
172.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
170.5
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
170.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
168.7
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
164.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
164.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
163.9
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
163.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
160.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
157.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
157.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
151.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
150.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
150.1
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
145.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
142.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
139.5
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
137.8
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
130.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
128.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
126.3
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
125.9
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
125.6
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
123.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
122.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
122.0
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
121.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
118.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
116.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
115.6
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
114.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
113.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
105.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
104.4
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
101.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
100.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
98.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
94.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
89.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
86.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
84.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
80.0
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
76.5
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
75.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
70.3
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
65.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
64.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
64.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
61.1
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
58.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
55.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
51.6
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
38.8
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
35.2
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
30.2
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
19.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
12.4
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
10.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
8.6
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
5.9
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
91.2
Mouse sample
Sample description
nTPM
Amygdala nTPM: 91.2
Samples: 4
Max nTPM: 102.1
Min nTPM: 86.6
Sample A
Male
87.8
Sample B
Male
88.2
Sample C
Female
86.6
Sample D
Female
102.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.