We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
218.8
nTPM
HPA Brain:
383.1
nTPM
GTEx:
218.8
nTPM
FANTOM5:
834.5
Scaled Tags Per Million
Pig:
363.4
nTPM
Mouse:
908.7
nTPM
Allen mouse:
18.5
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA042754
Antibody HPA043398
Glial cells
Not detected
Not detected
Neuronal cells
Low
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
383.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 268.6
1898
Male, age 80, left hemisphere
344.0
1911
Female, age 85, right hemisphere
275.9
1855
Male, age 76, left hemisphere
271.9
2621
Female, age 67, right hemisphere
255.3
2148
Female, age 91, left hemisphere
233.9
2529
Female, age 94, left hemisphere
230.6
Dentate gyrus nTPM: 270.7
1927
Female, age 91, both hemispheres
346.5
2010
Male, age 76, both hemispheres
295.1
2246
Female, age 85, both hemispheres
289.8
2528
Male, age 74, both hemispheres
279.7
2530
Female, age 94, left hemisphere
209.3
2531
Female, age 67, both hemispheres
203.7
Entorhinal gyrus nTPM: 281.1
1938
Female, age 85, left hemisphere
350.9
2764
Male, age 80, right hemisphere
318.9
1787
Male, age 76, left hemisphere
298.3
2117
Female, age 91, right hemisphere
275.6
2613
Female, age 94, left hemisphere
269.6
2686
Male, age 75, right hemisphere
173.6
Hippocampus, CA1 nTPM: 317.7
2749
Male, age 80, left hemisphere
461.1
1873
Female, age 85, both hemispheres
305.2
2527
Male, age 74, both hemispheres
299.3
2045
Male, age 76, both hemispheres
272.2
2082
Female, age 91, right hemisphere
250.7
Hippocampus, CA2 nTPM: 291.8
1892
Male, age 76, both hemispheres
371.1
2249
Male, age 74, both hemispheres
324.1
1963
Male, age 80, left hemisphere
310.6
1940
Female, age 85, left hemisphere
274.0
2113
Female, age 91, right hemisphere
249.6
2437
Female, age 94, left hemisphere
221.3
Hippocampus, CA3 nTPM: 327.9
2137
Male, age 80, left hemisphere
459.9
2436
Male, age 74, both hemispheres
371.6
2620
Female, age 94, left hemisphere
361.1
1867
Male, age 76, both hemispheres
318.9
1891
Female, age 85, both hemispheres
269.0
2861
Female, age 67, both hemispheres
186.7
Parahippocampal cortex nTPM: 292.1
1850
Male, age 80, both hemispheres
396.0
1933
Female, age 85, both hemispheres
323.5
1990
Female, age 91, right hemisphere
317.6
2250
Female, age 67, right hemisphere
305.2
2693
Female, age 94, both hemispheres
290.0
2245
Female, age 91, both hemispheres
286.7
2532
Female, age 72, left hemisphere
283.9
2018
Male, age 76, both hemispheres
269.5
2692
Male, age 74, both hemispheres
248.5
2622
Female, age 67, right hemisphere
200.1
Perirhinal gyrus nTPM: 383.1
1794
Male, age 80, right hemisphere
429.1
1847
Female, age 91, left hemisphere
396.7
1841
Female, age 85, right hemisphere
394.9
2521
Female, age 94, right hemisphere
363.7
2848
Male, age 76, right hemisphere
331.2
Subiculum nTPM: 273.7
1977
Female, age 85, both hemispheres
328.6
1901
Male, age 80, both hemispheres
316.8
2042
Male, age 76, both hemispheres
257.3
2619
Male, age 74, both hemispheres
254.0
2729
Female, age 91, right hemisphere
246.0
2438
Female, age 94, left hemisphere
239.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
218.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 218.8
Samples: 197
Max nTPM: 539.0
Min nTPM: 59.1
Std nTPM: 65.4
Median nTPM: 210.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
539.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
529.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
400.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
365.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
355.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
353.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
345.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
340.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
327.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
321.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
317.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
312.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
311.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
305.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
303.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
303.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
302.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
299.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
299.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
295.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
293.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
293.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
292.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
286.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
283.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
282.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
281.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
279.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
278.1
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
276.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
276.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
276.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
275.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
275.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
271.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
270.3
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
269.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
266.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
265.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
261.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
261.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
260.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
260.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
259.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
258.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
256.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
255.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
255.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
255.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
254.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
253.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
252.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
252.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
252.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
251.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
249.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
248.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
246.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
245.4
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
243.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
242.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
241.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
241.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
240.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
240.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
239.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
239.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
239.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
237.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
237.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
237.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
236.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
234.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
234.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
233.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
232.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
230.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
228.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
227.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
227.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
227.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
226.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
224.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
224.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
224.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
223.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
222.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
222.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
219.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
218.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
218.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
216.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
215.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
214.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
214.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
211.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
210.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
210.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
210.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
209.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
209.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
208.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
206.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
204.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
203.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
203.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
203.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
202.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
202.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
202.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
202.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
201.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
200.5
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
200.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
200.3
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
199.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
199.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
197.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
197.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
197.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
196.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
195.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
195.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
194.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
194.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
193.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
193.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
192.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
192.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
191.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
191.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
191.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
190.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
189.9
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
189.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
188.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
188.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
187.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
186.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
186.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
185.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
179.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
177.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
177.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
176.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
176.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
175.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
175.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
174.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
174.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
173.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
173.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
172.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
171.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
170.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
170.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
168.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
165.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
165.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
165.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
163.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
161.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
159.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
158.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
158.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
158.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
157.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
153.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
153.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
153.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
152.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
151.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
148.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
148.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
148.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
145.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
144.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
144.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
144.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
144.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
142.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
142.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
142.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
138.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
138.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
137.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
137.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
133.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
129.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
120.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
118.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
118.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
114.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
111.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
103.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
71.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
59.1
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
908.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 832.2
Samples: 4
Max nTPM: 911.4
Min nTPM: 790.2
Sample A
Male
790.2
Sample B
Male
790.9
Sample C
Female
836.2
Sample D
Female
911.4
Hippocampal formation nTPM: 908.7
Samples: 4
Max nTPM: 959.7
Min nTPM: 812.2
Sample A
Male
959.7
Sample B
Male
948.0
Sample C
Female
914.9
Sample D
Female
812.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.