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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RGS19 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
41.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
29.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RGS19 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.7
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
917
Tumor
1.2
211
Tumor
1.1
125
Tumor
1.1
343
Tumor
1.1
467
Tumor
1.0
434
Normal
0.9
724
Normal
0.9
661
Tumor
0.9
536
Normal
0.9
283
Tumor
0.8
375
Tumor
0.8
721
Tumor
0.8
213
Tumor
0.8
851
Tumor
0.8
447
Tumor
0.7
126
Normal
0.7
311
Tumor
0.7
778
Normal
0.7
814
Normal
0.7
713
Tumor
0.7
195
Tumor
0.7
535
Tumor
0.6
686
Normal
0.6
573
Tumor
0.6
877
Tumor
0.6
192
Normal
0.6
498
Normal
0.6
478
Normal
0.6
916
Normal
0.6
455
Tumor
0.6
444
Normal
0.6
492
Normal
0.5
224
Normal
0.5
217
Tumor
0.5
563
Tumor
0.5
124
Normal
0.5
716
Normal
0.5
852
Normal
0.5
815
Tumor
0.5
966
Normal
0.5
383
Tumor
0.5
312
Normal
0.5
671
Tumor
0.5
524
Normal
0.5
344
Normal
0.5
278
Normal
0.5
722
Normal
0.5
138
Normal
0.5
978
Normal
0.5
385
Tumor
0.4
672
Normal
0.4
352
Normal
0.4
976
Normal
0.4
384
Normal
0.4
816
Normal
0.4
823
Tumor
0.4
538
Normal
0.4
223
Tumor
0.4
421
Tumor
0.4
558
Normal
0.4
813
Tumor
0.4
491
Tumor
0.4
367
Tumor
0.4
284
Normal
0.4
262
Normal
0.4
146
Normal
0.4
984
Normal
0.3
862
Normal
0.3
926
Normal
0.3
185
Tumor
0.3
954
Normal
0.3
212
Normal
0.3
628
Normal
0.3
368
Normal
0.3
362
Normal
0.3
868
Normal
0.3
328
Normal
0.3
956
Normal
0.3
432
Normal
0.3
268
Normal
0.3
471
Tumor
0.3
914
Normal
0.3
297
Tumor
0.3
574
Normal
0.3
468
Normal
0.3
386
Normal
0.3
866
Normal
0.3
666
Normal
0.3
943
Tumor
0.3
391
Tumor
0.3
314
Normal
0.3
881
Tumor
0.3
188
Normal
0.3
141
Tumor
0.3
963
Tumor
0.3
975
Tumor
0.2
1015
Tumor
0.2
1028
Normal
0.2
286
Normal
0.2
488
Normal
0.2
446
Normal
0.2
218
Normal
0.2
358
Normal
0.2
617
Tumor
0.2
142
Normal
0.2
696
Normal
0.2
354
Normal
0.2
415
Tumor
0.2
1042
Normal
0.2
394
Normal
0.2
228
Normal
0.2
526
Normal
0.2
366
Normal
0.2
528
Normal
0.2
874
Normal
0.2
857
Tumor
0.2
494
Normal
0.2
958
Normal
0.2
922
Normal
0.2
395
Tumor
0.2
884
Normal
0.2
1044
Normal
0.2
191
Tumor
0.2
396
Normal
0.2
111
Normal
0.2
925
Tumor
0.2
518
Normal
0.2
298
Normal
0.2
272
Normal
0.2
392
Normal
0.1
968
Normal
0.1
952
Normal
0.1
493
Tumor
0.1
1014
Normal
0.1
424
Normal
0.1
545
Tumor
0.1
728
Normal
0.1
364
Normal
0.1
878
Normal
0.1
232
Normal
0.1
983
Tumor
0.1
738
Normal
0.1
1031
Tumor
0.1
918
Normal
0.1
714
Normal
0.1
858
Normal
0.1
744
Normal
0.1
938
Normal
0.1
516
Normal
0.1
864
Normal
0.1
664
Normal
0.1
818
Normal
0.1
817
Tumor
0.1
697
Tumor
0.1
376
Normal
0.1
342
Normal
0.1
461
Tumor
0.1
964
Normal
0.1
514
Normal
0.1
114
Normal
0.1
145
Tumor
0.1
1016
Normal
0.1
525
Tumor
0.1
214
Normal
0.1
351
Tumor
0.1
355
Tumor
0.1
824
Normal
0.1
456
Normal
0.0
546
Normal
0.0
258
Normal
0.0
448
Normal
0.0
356
Normal
0.0
883
Tumor
0.0
1022
Normal
0.0
742
Normal
0.0
186
Normal
0.0
136
Normal
0.0
412
Normal
0.0
474
Normal
0.0
472
Normal
0.0
231
Tumor
0.0
756
Normal
0.0
1026
Normal
0.0
564
Normal
0.0
482
Normal
0.0
387
Tumor
0.0
873
Tumor
0.0
982
Normal
0.0
414
Normal
0.0
388
Normal
0.0
662
Normal
0.0
882
Normal
0.0
285
Tumor
0.0
723
Tumor
0.0
422
Normal
0.0
913
Tumor
0.0
172
Normal
0.0
267
Tumor
-0.1
261
Tumor
-0.1
867
Tumor
-0.1
955
Tumor
-0.1
1043
Tumor
-0.1
365
Tumor
-0.1
1032
Normal
-0.1
363
Tumor
-0.1
137
Tumor
-0.1
554
Normal
-0.1
416
Normal
-0.1
618
Normal
-0.1
944
Normal
-0.1
924
Normal
-0.1
636
Normal
-0.1
132
Normal
-0.1
162
Normal
-0.1
1046
Normal
-0.1
277
Tumor
-0.1
462
Normal
-0.1
413
Tumor
-0.1
257
Tumor
-0.1
433
Tumor
-0.1
786
Normal
-0.1
863
Tumor
-0.1
428
Normal
-0.1
572
Normal
-0.1
553
Tumor
-0.1
464
Normal
-0.1
915
Tumor
-0.2
568
Normal
-0.2
187
Tumor
-0.2
861
Tumor
-0.2
161
Tumor
-0.2
923
Tumor
-0.2
642
Normal
-0.2
148
Normal
-0.2
271
Tumor
-0.2
436
Normal
-0.2
196
Normal
-0.2
557
Tumor
-0.2
451
Tumor
-0.2
466
Normal
-0.2
484
Normal
-0.2
641
Tumor
-0.2
481
Tumor
-0.2
715
Tumor
-0.2
327
Tumor
-0.2
1013
Tumor
-0.2
222
Normal
-0.2
135
Tumor
-0.2
361
Tumor
-0.2
665
Tumor
-0.2
427
Tumor
-0.2
353
Tumor
-0.3
616
Normal
-0.3
727
Tumor
-0.3
912
Normal
-0.3
534
Normal
-0.3
127
Tumor
-0.3
425
Tumor
-0.3
443
Tumor
-0.3
483
Tumor
-0.3
865
Tumor
-0.3
785
Tumor
-0.3
426
Normal
-0.3
746
Normal
-0.3
698
Normal
-0.3
341
Tumor
-0.3
147
Tumor
-0.4
221
Tumor
-0.4
1027
Tumor
-0.4
411
Tumor
-0.4
537
Tumor
-0.4
113
Tumor
-0.4
953
Tumor
-0.4
463
Tumor
-0.4
313
Tumor
-0.4
663
Tumor
-0.4
112
Tumor
-0.4
452
Normal
-0.4
951
Tumor
-0.4
171
Tumor
-0.5
1025
Tumor
-0.5
571
Tumor
-0.5
627
Tumor
-0.5
685
Tumor
-0.5
431
Tumor
-0.5
473
Tumor
-0.5
1045
Tumor
-0.5
513
Tumor
-0.5
755
Tumor
-0.5
515
Tumor
-0.5
227
Tumor
-0.5
497
Tumor
-0.5
517
Tumor
-0.5
423
Tumor
-0.5
1021
Tumor
-0.6
937
Tumor
-0.6
921
Tumor
-0.6
128
Normal
-0.6
477
Tumor
-0.6
648
Normal
-0.6
445
Tumor
-0.6
567
Tumor
-0.6
737
Tumor
-0.6
977
Tumor
-0.6
527
Tumor
-0.7
393
Tumor
-0.7
131
Tumor
-0.7
967
Tumor
-0.7
957
Tumor
-0.7
357
Tumor
-0.7
1041
Tumor
-0.7
911
Tumor
-0.7
533
Tumor
-0.7
615
Tumor
-0.8
465
Tumor
-0.8
523
Tumor
-0.8
487
Tumor
-0.8
123
Tumor
-0.8
435
Tumor
-0.8
981
Tumor
-0.8
777
Tumor
-0.9
695
Tumor
-0.9
635
Tumor
-1.0
647
Tumor
-1.1
965
Tumor
-1.1
745
Tumor
-1.1
741
Tumor
-1.1
743
Tumor
-1.1
331
Tumor
-1.6
332
Normal
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
