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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
18.7
nTPM
HPA Brain:
59.3
nTPM
GTEx:
18.7
nTPM
FANTOM5:
0.7
Scaled Tags Per Million
Pig:
50.4
nTPM
Mouse:
25.5
nTPM
Allen mouse:
7.7
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
59.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 38.2
2219
Male, age 76, both hemispheres
58.6
2828
Female, age 72, unknown
52.1
1827
Male, age 72, unknown
47.7
2666
Male, age 74, left hemisphere
44.2
2019
Male, age 18, unknown
38.9
2411
Female, age 72, unknown
32.2
2586
Male, age 75, left hemisphere
30.3
1870
Female, age 42, unknown
27.4
1833
Male, age 53, unknown
27.1
1830
Male, age 51, unknown
23.7
Dorsal raphe nucleus nTPM: 33.2
2750
Male, age 76, both hemispheres
40.8
2298
Female, age 72, unknown
37.2
2047
Male, age 72, unknown
36.2
1828
Male, age 53, unknown
31.0
2016
Female, age 72, unknown
20.7
Inferior colliculus nTPM: 31.6
2097
Female, age 72, unknown
39.2
1890
Male, age 53, unknown
30.4
1848
Female, age 42, unknown
29.2
2849
Male, age 72, unknown
27.4
Median raphe nucleus nTPM: 59.3
2220
Male, age 76, midline
59.3
Periaquaductal grey, anterior nTPM: 55.0
2502
Female, age 75, unknown
60.8
1795
Male, age 51, unknown
59.4
1947
Male, age 18, unknown
44.7
Periaquaductal grey, dorsal nTPM: 31.7
1831
Male, age 72, unknown
36.8
1840
Male, age 53, unknown
30.8
2850
Male, age 76, both hemispheres
30.0
2464
Female, age 72, unknown
29.1
Periaquaductal grey, lateral nTPM: 27.7
2053
Male, age 18, unknown
29.5
2140
Male, age 76, both hemispheres
28.2
2272
Male, age 74, both hemispheres
25.4
Pretectal area nTPM: 48.5
1816
Male, age 51, unknown
80.3
1944
Female, age 72, unknown
69.6
2667
Female, age 75, unknown
64.5
2007
Male, age 72, unknown
63.4
1817
Female, age 42, unknown
60.8
1815
Male, age 53, unknown
54.7
2224
Female, age 72, unknown
36.4
2825
Male, age 18, unknown
32.0
2316
Male, age 76, right hemisphere
26.1
2407
Male, age 75, both hemispheres
23.6
2273
Male, age 74, both hemispheres
21.8
Red nucleus nTPM: 27.8
2785
Male, age 18, unknown
39.1
2588
Male, age 74, left hemisphere
31.4
1954
Female, age 42, unknown
31.1
2584
Male, age 75, left hemisphere
30.5
2503
Female, age 72, unknown
28.5
1904
Male, age 53, unknown
27.0
1821
Female, age 72, unknown
26.8
2823
Male, age 76, right hemisphere
26.7
2769
Male, age 72, unknown
25.6
2227
Male, age 72, unknown
24.8
1865
Male, age 51, unknown
22.1
2725
Female, age 75, unknown
19.7
Substantia nigra nTPM: 44.1
2665
Male, age 74, both hemispheres
79.0
1916
Female, age 42, unknown
72.9
1889
Female, age 72, unknown
51.1
1941
Male, age 53, unknown
49.5
1851
Male, age 51, unknown
48.2
2409
Female, age 72, unknown
37.7
2699
Male, age 18, unknown
32.1
2241
Male, age 72, unknown
29.6
2590
Female, age 75, unknown
22.3
2583
Male, age 75, right hemisphere
18.3
Superior colliculus nTPM: 40.1
2668
Female, age 75, unknown
57.8
2087
Female, age 72, unknown
55.2
1796
Male, age 53, unknown
52.5
2261
Male, age 18, unknown
49.9
2664
Male, age 75, both hemispheres
36.8
1913
Female, age 42, unknown
33.0
1895
Male, age 76, right hemisphere
32.5
1839
Male, age 51, unknown
31.4
1995
Male, age 72, unknown
28.4
2587
Male, age 74, left hemisphere
23.8
Ventral tegmental area nTPM: 43.1
2218
Male, age 76, both hemispheres
63.4
2410
Female, age 72, unknown
48.5
1915
Female, age 42, unknown
47.2
1942
Male, age 51, unknown
40.1
2021
Male, age 53, unknown
29.8
2223
Female, age 72, unknown
29.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 18.7
Samples: 139
Max nTPM: 67.4
Min nTPM: 0.2
Std nTPM: 17.3
Median nTPM: 13.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
67.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
66.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
64.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
63.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
61.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
60.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
59.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
58.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
56.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
55.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
47.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
45.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
44.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
44.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
44.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
43.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
40.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
39.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
39.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
38.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
38.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
38.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
37.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
33.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
33.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
33.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
32.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
30.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
30.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
29.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
29.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
29.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
29.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
28.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
28.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
27.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
27.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
27.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
26.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
26.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
26.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
25.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
25.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
25.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
24.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
24.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
24.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
23.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
23.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
23.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
22.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
22.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
21.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
20.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
19.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
19.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
19.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
17.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
17.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
17.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
17.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
17.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
16.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
16.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
16.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
16.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
15.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
14.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
14.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
13.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
12.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
12.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
12.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
12.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
11.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
11.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
11.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
10.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
10.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
10.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
10.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
9.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
9.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
8.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
7.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
7.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
7.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
6.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
6.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
6.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
6.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
6.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
5.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
5.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
5.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
5.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
5.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
5.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
4.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
4.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
4.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
4.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
4.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
4.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
3.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
3.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
3.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
3.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
3.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
3.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
3.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
3.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
2.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
2.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
2.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
2.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
2.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
2.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
2.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
2.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
0.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
0.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
0.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
0.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
0.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
0.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
25.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 25.5
Samples: 4
Max nTPM: 26.6
Min nTPM: 23.9
Sample A
Male
25.8
Sample B
Male
23.9
Sample C
Female
26.6
Sample D
Female
25.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.