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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
51.2
nTPM
HPA Brain:
60.5
nTPM
GTEx:
51.2
nTPM
FANTOM5:
63.7
Scaled Tags Per Million
Pig:
50.1
nTPM
Mouse:
44.1
nTPM
Allen mouse:
5.3
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA068009
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
60.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 41.2
1911
Female, age 85, right hemisphere
51.3
2529
Female, age 94, left hemisphere
43.0
1898
Male, age 80, left hemisphere
41.4
2621
Female, age 67, right hemisphere
39.8
1855
Male, age 76, left hemisphere
37.4
2148
Female, age 91, left hemisphere
34.5
Dentate gyrus nTPM: 42.8
2530
Female, age 94, left hemisphere
76.9
2528
Male, age 74, both hemispheres
45.1
2010
Male, age 76, both hemispheres
41.3
2246
Female, age 85, both hemispheres
34.9
2531
Female, age 67, both hemispheres
29.3
1927
Female, age 91, both hemispheres
29.0
Entorhinal gyrus nTPM: 46.7
2117
Female, age 91, right hemisphere
85.2
2764
Male, age 80, right hemisphere
62.4
1938
Female, age 85, left hemisphere
38.1
2613
Female, age 94, left hemisphere
36.0
2686
Male, age 75, right hemisphere
30.9
1787
Male, age 76, left hemisphere
27.5
Hippocampus, CA1 nTPM: 32.6
2527
Male, age 74, both hemispheres
41.1
1873
Female, age 85, both hemispheres
37.2
2082
Female, age 91, right hemisphere
36.3
2749
Male, age 80, left hemisphere
32.8
2045
Male, age 76, both hemispheres
15.8
Hippocampus, CA2 nTPM: 45.2
1963
Male, age 80, left hemisphere
66.4
2249
Male, age 74, both hemispheres
57.5
2437
Female, age 94, left hemisphere
42.8
2113
Female, age 91, right hemisphere
41.1
1940
Female, age 85, left hemisphere
38.7
1892
Male, age 76, both hemispheres
24.4
Hippocampus, CA3 nTPM: 30.0
1891
Female, age 85, both hemispheres
66.4
1867
Male, age 76, both hemispheres
34.3
2436
Male, age 74, both hemispheres
30.4
2137
Male, age 80, left hemisphere
20.8
2620
Female, age 94, left hemisphere
15.0
2861
Female, age 67, both hemispheres
12.9
Parahippocampal cortex nTPM: 33.3
1990
Female, age 91, right hemisphere
51.3
2532
Female, age 72, left hemisphere
47.8
2692
Male, age 74, both hemispheres
46.0
1933
Female, age 85, both hemispheres
36.8
1850
Male, age 80, both hemispheres
36.6
2245
Female, age 91, both hemispheres
35.1
2018
Male, age 76, both hemispheres
24.4
2250
Female, age 67, right hemisphere
23.5
2693
Female, age 94, both hemispheres
22.6
2622
Female, age 67, right hemisphere
9.1
Perirhinal gyrus nTPM: 22.4
2521
Female, age 94, right hemisphere
26.4
1847
Female, age 91, left hemisphere
23.5
1794
Male, age 80, right hemisphere
21.3
2848
Male, age 76, right hemisphere
20.7
1841
Female, age 85, right hemisphere
20.2
Subiculum nTPM: 60.5
2042
Male, age 76, both hemispheres
83.3
1901
Male, age 80, both hemispheres
78.7
1977
Female, age 85, both hemispheres
65.5
2438
Female, age 94, left hemisphere
52.5
2619
Male, age 74, both hemispheres
44.5
2729
Female, age 91, right hemisphere
38.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
51.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 51.2
Samples: 197
Max nTPM: 209.9
Min nTPM: 2.4
Std nTPM: 37.0
Median nTPM: 40.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
209.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
199.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
184.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
153.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
149.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
142.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
138.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
133.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
132.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
116.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
114.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
113.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
111.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
110.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
110.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
108.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
108.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
104.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
103.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
102.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
101.1
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
99.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
98.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
98.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
97.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
96.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
96.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
95.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
93.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
93.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
93.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
88.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
87.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
85.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
80.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
78.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
77.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
76.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
75.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
74.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
73.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
70.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
70.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
70.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
70.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
69.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
69.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
69.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
68.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
68.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
66.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
65.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
64.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
63.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
63.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
62.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
61.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
61.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
61.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
61.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
60.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
60.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
59.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
59.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
59.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
59.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
58.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
58.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
57.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
57.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
56.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
55.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
55.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
53.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
53.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
51.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
49.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
49.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
49.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
48.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
48.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
48.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
48.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
47.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
47.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
46.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
46.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
46.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
45.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
45.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
44.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
44.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
43.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
42.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
42.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
42.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
41.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
41.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
40.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
40.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
40.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
39.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
39.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
39.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
39.2
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
38.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
38.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
37.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
37.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
36.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
36.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
35.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
34.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
34.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
34.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
34.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
33.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
33.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
33.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
33.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
32.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
32.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
32.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
31.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
31.6
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
31.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
30.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
29.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
28.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
28.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
28.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
27.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
27.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
27.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
27.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
27.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
27.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
26.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
26.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
26.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
25.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
25.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
25.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
25.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
25.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
25.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
25.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
25.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
24.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
24.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
24.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
24.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
24.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
23.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
23.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
22.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
22.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
21.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
21.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
21.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
20.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
20.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
20.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
19.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
19.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
19.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
18.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
18.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
18.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
18.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
18.1
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
18.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
18.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
17.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
17.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
16.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
16.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
16.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
15.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
15.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
15.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
14.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
13.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
12.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
12.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
11.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
11.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
9.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
8.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
7.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
7.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
6.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
6.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
6.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
5.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
4.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
2.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 21.9
Samples: 4
Max nTPM: 31.8
Min nTPM: 13.4
Sample A
Male
31.8
Sample B
Male
20.6
Sample C
Female
21.7
Sample D
Female
13.4
Hippocampal formation nTPM: 44.1
Samples: 4
Max nTPM: 60.2
Min nTPM: 34.0
Sample A
Male
34.0
Sample B
Male
43.4
Sample C
Female
60.2
Sample D
Female
38.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.