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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
35.5
nTPM
HPA Brain:
30.2
nTPM
GTEx:
35.5
nTPM
FANTOM5:
108.4
Scaled Tags Per Million
Pig:
15.2
nTPM
Mouse:
2.1
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 16.2
2828
Female, age 72, unknown
22.2
2666
Male, age 74, left hemisphere
17.6
1830
Male, age 51, unknown
17.5
2411
Female, age 72, unknown
17.5
2019
Male, age 18, unknown
16.7
1833
Male, age 53, unknown
16.1
1870
Female, age 42, unknown
15.6
2219
Male, age 76, both hemispheres
14.2
2586
Male, age 75, left hemisphere
12.8
1827
Male, age 72, unknown
12.2
Dorsal raphe nucleus nTPM: 27.1
2298
Female, age 72, unknown
42.9
2016
Female, age 72, unknown
29.3
2750
Male, age 76, both hemispheres
24.6
2047
Male, age 72, unknown
19.6
1828
Male, age 53, unknown
18.8
Inferior colliculus nTPM: 20.4
2097
Female, age 72, unknown
24.7
1890
Male, age 53, unknown
21.2
1848
Female, age 42, unknown
19.0
2849
Male, age 72, unknown
16.8
Median raphe nucleus nTPM: 21.6
2220
Male, age 76, midline
21.6
Periaquaductal grey, anterior nTPM: 21.4
1795
Male, age 51, unknown
30.3
1947
Male, age 18, unknown
19.2
2502
Female, age 75, unknown
14.7
Periaquaductal grey, dorsal nTPM: 29.5
1831
Male, age 72, unknown
44.3
1840
Male, age 53, unknown
30.2
2850
Male, age 76, both hemispheres
21.8
2464
Female, age 72, unknown
21.6
Periaquaductal grey, lateral nTPM: 30.2
2272
Male, age 74, both hemispheres
42.5
2053
Male, age 18, unknown
27.5
2140
Male, age 76, both hemispheres
20.7
Pretectal area nTPM: 23.2
2407
Male, age 75, both hemispheres
36.6
2273
Male, age 74, both hemispheres
34.5
2316
Male, age 76, right hemisphere
29.1
2224
Female, age 72, unknown
24.8
2007
Male, age 72, unknown
24.5
2825
Male, age 18, unknown
22.8
1815
Male, age 53, unknown
20.9
1944
Female, age 72, unknown
20.3
1817
Female, age 42, unknown
15.5
1816
Male, age 51, unknown
14.1
2667
Female, age 75, unknown
11.8
Red nucleus nTPM: 16.4
2725
Female, age 75, unknown
24.5
2503
Female, age 72, unknown
24.1
2823
Male, age 76, right hemisphere
19.5
2584
Male, age 75, left hemisphere
17.3
1865
Male, age 51, unknown
16.8
2227
Male, age 72, unknown
16.1
2769
Male, age 72, unknown
15.6
2785
Male, age 18, unknown
15.2
1821
Female, age 72, unknown
14.9
1904
Male, age 53, unknown
13.1
1954
Female, age 42, unknown
10.6
2588
Male, age 74, left hemisphere
9.3
Substantia nigra nTPM: 24.4
2590
Female, age 75, unknown
51.9
2665
Male, age 74, both hemispheres
29.5
2699
Male, age 18, unknown
24.7
1851
Male, age 51, unknown
22.9
1916
Female, age 42, unknown
21.9
2409
Female, age 72, unknown
21.7
1941
Male, age 53, unknown
20.6
2583
Male, age 75, right hemisphere
20.4
2241
Male, age 72, unknown
17.3
1889
Female, age 72, unknown
13.5
Superior colliculus nTPM: 20.5
1995
Male, age 72, unknown
30.8
2087
Female, age 72, unknown
23.5
2587
Male, age 74, left hemisphere
22.7
1913
Female, age 42, unknown
22.3
1796
Male, age 53, unknown
21.7
2261
Male, age 18, unknown
19.9
1839
Male, age 51, unknown
19.8
2664
Male, age 75, both hemispheres
19.4
2668
Female, age 75, unknown
14.4
1895
Male, age 76, right hemisphere
10.4
Ventral tegmental area nTPM: 24.3
2021
Male, age 53, unknown
36.8
1915
Female, age 42, unknown
27.1
2218
Male, age 76, both hemispheres
24.1
1942
Male, age 51, unknown
21.4
2410
Female, age 72, unknown
20.1
2223
Female, age 72, unknown
16.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 35.5
Samples: 139
Max nTPM: 231.6
Min nTPM: 3.1
Std nTPM: 44.0
Median nTPM: 19.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
231.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
222.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
215.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
197.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
178.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
175.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
115.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
114.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
113.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
112.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
107.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
99.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
94.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
91.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
83.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
79.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
73.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
68.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
64.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
62.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
57.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
55.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
52.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
50.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
50.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
47.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
46.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
42.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
42.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
41.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
40.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
40.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
39.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
38.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
38.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
38.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
38.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
37.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
37.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
37.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
37.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
36.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
36.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
35.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
33.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
31.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
30.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
30.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
29.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
29.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
28.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
28.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
28.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
27.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
26.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
26.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
25.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
25.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
25.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
24.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
24.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
24.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
21.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
21.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
21.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
21.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
20.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
19.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
19.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
19.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
19.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
18.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
18.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
18.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
17.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
17.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
17.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
17.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
16.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
16.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
15.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
15.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
15.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
15.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
14.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
14.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
13.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
13.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
13.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
13.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
13.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
13.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
12.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
12.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
12.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
12.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
12.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
12.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
12.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
11.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
11.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
11.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
11.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
11.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
10.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
10.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
10.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
10.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
9.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
9.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
9.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
8.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
8.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
8.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
8.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
8.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
8.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
8.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
8.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
8.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
7.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
7.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
7.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
7.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
7.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
6.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
6.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
6.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
6.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
6.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
6.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
5.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
5.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
4.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
4.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
4.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
4.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
4.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
3.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 2.2
Samples: 4
Max nTPM: 2.4
Min nTPM: 1.9
Sample A
Male
2.4
Sample B
Male
2.2
Sample C
Female
1.9
Sample D
Female
2.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.