We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
20.5
nTPM
HPA Brain:
17.4
nTPM
GTEx:
20.5
nTPM
FANTOM5:
60.5
Scaled Tags Per Million
Pig:
8.6
nTPM
Mouse:
2.5
nTPM
Allen mouse:
0.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA001887
Antibody HPA002127
Antibody CAB033631
Antibody CAB072865
Antibody CAB072866
Glial cells
Not detected
Not detected
Not detected
Not detected
Not detected
Neuronal cells
Not detected
Not detected
Not detected
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 17.4
2621
Female, age 67, right hemisphere
27.4
1898
Male, age 80, left hemisphere
19.9
1855
Male, age 76, left hemisphere
17.5
1911
Female, age 85, right hemisphere
14.1
2529
Female, age 94, left hemisphere
12.8
2148
Female, age 91, left hemisphere
12.4
Dentate gyrus nTPM: 14.4
2531
Female, age 67, both hemispheres
19.8
2528
Male, age 74, both hemispheres
16.5
1927
Female, age 91, both hemispheres
13.4
2010
Male, age 76, both hemispheres
13.0
2530
Female, age 94, left hemisphere
12.7
2246
Female, age 85, both hemispheres
10.9
Entorhinal gyrus nTPM: 13.4
2117
Female, age 91, right hemisphere
25.2
1787
Male, age 76, left hemisphere
18.4
2613
Female, age 94, left hemisphere
10.9
1938
Female, age 85, left hemisphere
10.0
2764
Male, age 80, right hemisphere
8.9
2686
Male, age 75, right hemisphere
7.0
Hippocampus, CA1 nTPM: 12.9
2045
Male, age 76, both hemispheres
16.4
2082
Female, age 91, right hemisphere
16.0
1873
Female, age 85, both hemispheres
13.5
2527
Male, age 74, both hemispheres
10.9
2749
Male, age 80, left hemisphere
8.0
Hippocampus, CA2 nTPM: 17.2
1940
Female, age 85, left hemisphere
28.9
1892
Male, age 76, both hemispheres
17.5
2113
Female, age 91, right hemisphere
16.9
2437
Female, age 94, left hemisphere
14.3
2249
Male, age 74, both hemispheres
13.5
1963
Male, age 80, left hemisphere
12.0
Hippocampus, CA3 nTPM: 13.3
1867
Male, age 76, both hemispheres
22.5
2861
Female, age 67, both hemispheres
16.0
2436
Male, age 74, both hemispheres
13.5
1891
Female, age 85, both hemispheres
12.0
2620
Female, age 94, left hemisphere
8.0
2137
Male, age 80, left hemisphere
7.4
Parahippocampal cortex nTPM: 14.1
2250
Female, age 67, right hemisphere
43.9
2018
Male, age 76, both hemispheres
24.8
1990
Female, age 91, right hemisphere
13.5
2693
Female, age 94, both hemispheres
11.4
2245
Female, age 91, both hemispheres
11.2
1933
Female, age 85, both hemispheres
8.5
1850
Male, age 80, both hemispheres
8.0
2532
Female, age 72, left hemisphere
6.9
2692
Male, age 74, both hemispheres
6.8
2622
Female, age 67, right hemisphere
6.2
Perirhinal gyrus nTPM: 13.2
2521
Female, age 94, right hemisphere
17.5
2848
Male, age 76, right hemisphere
15.1
1841
Female, age 85, right hemisphere
11.5
1847
Female, age 91, left hemisphere
11.4
1794
Male, age 80, right hemisphere
10.5
Subiculum nTPM: 14.2
2729
Female, age 91, right hemisphere
22.8
2042
Male, age 76, both hemispheres
19.5
2619
Male, age 74, both hemispheres
12.6
1901
Male, age 80, both hemispheres
10.6
1977
Female, age 85, both hemispheres
10.0
2438
Female, age 94, left hemisphere
9.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 20.5
Samples: 197
Max nTPM: 175.0
Min nTPM: 1.9
Std nTPM: 24.0
Median nTPM: 12.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
175.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
120.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
113.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
101.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
99.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
94.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
94.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
93.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
91.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
79.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
75.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
57.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
56.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
52.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
52.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
48.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
48.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
47.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
47.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
43.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
39.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
39.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
38.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
38.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
37.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
37.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
36.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
36.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
36.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
35.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
35.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
33.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
32.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
31.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
30.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
30.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
28.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
27.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
26.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
26.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
25.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
24.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
24.4
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
23.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
23.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
23.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
22.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
22.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
22.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
22.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
21.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
21.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
21.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
21.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
21.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
20.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
20.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
20.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
20.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
19.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
19.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
19.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
19.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
19.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
19.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
18.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
18.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
18.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
18.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
18.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
18.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
18.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
16.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
16.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
16.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
16.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
15.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
15.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
15.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
15.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
14.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
14.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
14.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
14.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
14.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
14.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
14.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
14.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
14.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
14.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
13.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
13.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
13.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
13.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
13.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
13.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
13.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
12.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
12.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
12.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
11.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
11.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
11.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
11.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
11.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
11.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
10.9
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
10.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
10.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
10.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
10.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
10.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
10.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
10.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
10.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
10.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
10.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
10.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
9.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
9.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
9.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
9.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
9.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
9.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
9.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
9.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
9.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
9.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
9.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
9.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
9.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
9.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
8.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
8.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
8.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
8.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
8.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
8.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
8.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
8.0
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
7.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
7.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
7.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
7.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
7.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
7.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
7.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
7.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
7.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
7.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
7.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
7.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
7.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
7.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
7.0
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
6.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
6.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
6.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
6.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
6.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
6.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
6.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
6.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
6.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
6.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
5.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
5.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
5.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
5.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
5.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
5.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
5.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
5.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
5.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
5.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
4.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
4.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
4.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
4.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
4.8
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
4.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
4.6
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
4.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
4.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
4.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
4.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
4.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
3.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
3.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
3.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
3.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
3.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
2.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
2.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
2.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
2.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
1.9
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 2.6
Samples: 4
Max nTPM: 2.9
Min nTPM: 2.3
Sample A
Male
2.3
Sample B
Male
2.4
Sample C
Female
2.6
Sample D
Female
2.9
Hippocampal formation nTPM: 2.4
Samples: 4
Max nTPM: 2.7
Min nTPM: 2.0
Sample A
Male
2.0
Sample B
Male
2.3
Sample C
Female
2.7
Sample D
Female
2.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.