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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDK1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 1.63
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
5.6e-7
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
30%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
54%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
121.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
67.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
67.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
60.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
51.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
50.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
49.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
47.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
43.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
43.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
39.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
29.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
27.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDK1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 2.14
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
3.8e-7
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
43%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
0%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
52.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
38.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
2.4
965
Tumor
2.4
983
Tumor
1.9
283
Tumor
1.7
351
Tumor
1.7
951
Tumor
1.6
123
Tumor
1.6
661
Tumor
1.6
413
Tumor
1.5
277
Tumor
1.5
967
Tumor
1.4
923
Tumor
1.4
385
Tumor
1.3
473
Tumor
1.3
877
Tumor
1.3
567
Tumor
1.2
743
Tumor
1.2
865
Tumor
1.2
285
Tumor
1.1
537
Tumor
1.1
497
Tumor
1.1
387
Tumor
1.1
331
Tumor
1.1
435
Tumor
1.1
367
Tumor
1.1
125
Tumor
1.0
161
Tumor
1.0
391
Tumor
1.0
213
Tumor
1.0
1021
Tumor
1.0
921
Tumor
0.9
211
Tumor
0.9
724
Normal
0.9
815
Tumor
0.8
814
Normal
0.8
447
Tumor
0.8
411
Tumor
0.8
737
Tumor
0.8
431
Tumor
0.8
647
Tumor
0.7
727
Tumor
0.7
671
Tumor
0.7
517
Tumor
0.7
171
Tumor
0.7
147
Tumor
0.7
535
Tumor
0.7
131
Tumor
0.7
357
Tumor
0.7
697
Tumor
0.6
525
Tumor
0.6
813
Tumor
0.6
957
Tumor
0.6
343
Tumor
0.6
355
Tumor
0.6
1031
Tumor
0.6
953
Tumor
0.5
493
Tumor
0.5
425
Tumor
0.5
227
Tumor
0.5
881
Tumor
0.5
313
Tumor
0.5
943
Tumor
0.4
713
Tumor
0.4
257
Tumor
0.4
112
Tumor
0.4
127
Tumor
0.4
883
Tumor
0.4
665
Tumor
0.4
341
Tumor
0.4
1013
Tumor
0.4
571
Tumor
0.4
523
Tumor
0.4
573
Tumor
0.3
271
Tumor
0.3
817
Tumor
0.3
361
Tumor
0.3
217
Tumor
0.3
427
Tumor
0.3
297
Tumor
0.3
483
Tumor
0.3
311
Tumor
0.3
873
Tumor
0.3
641
Tumor
0.3
231
Tumor
0.3
663
Tumor
0.3
487
Tumor
0.3
267
Tumor
0.3
375
Tumor
0.2
491
Tumor
0.2
695
Tumor
0.1
141
Tumor
0.1
383
Tumor
0.1
527
Tumor
0.1
545
Tumor
0.1
393
Tumor
0.1
443
Tumor
0.1
963
Tumor
0.0
975
Tumor
0.0
533
Tumor
0.0
741
Tumor
0.0
937
Tumor
0.0
755
Tumor
-0.1
135
Tumor
-0.1
851
Tumor
-0.1
433
Tumor
-0.1
861
Tumor
-0.1
467
Tumor
-0.1
221
Tumor
-0.1
977
Tumor
-0.1
185
Tumor
-0.1
1027
Tumor
-0.2
553
Tumor
-0.2
415
Tumor
-0.2
187
Tumor
-0.2
557
Tumor
-0.2
917
Tumor
-0.2
451
Tumor
-0.2
715
Tumor
-0.2
666
Normal
-0.2
662
Normal
-0.2
672
Normal
-0.2
465
Tumor
-0.2
944
Normal
-0.2
1043
Tumor
-0.3
332
Normal
-0.3
445
Tumor
-0.3
952
Normal
-0.3
455
Tumor
-0.3
966
Normal
-0.3
685
Tumor
-0.3
745
Tumor
-0.3
352
Normal
-0.3
278
Normal
-0.3
964
Normal
-0.3
113
Tumor
-0.3
1015
Tumor
-0.3
823
Tumor
-0.3
191
Tumor
-0.4
978
Normal
-0.4
981
Tumor
-0.4
648
Normal
-0.4
363
Tumor
-0.4
976
Normal
-0.4
938
Normal
-0.4
857
Tumor
-0.4
312
Normal
-0.4
984
Normal
-0.4
777
Tumor
-0.4
314
Normal
-0.4
421
Tumor
-0.5
664
Normal
-0.5
925
Tumor
-0.5
471
Tumor
-0.5
223
Tumor
-0.5
368
Normal
-0.5
498
Normal
-0.5
721
Tumor
-0.5
524
Normal
-0.5
434
Normal
-0.5
261
Tumor
-0.6
195
Tumor
-0.6
526
Normal
-0.6
866
Normal
-0.6
1041
Tumor
-0.6
924
Normal
-0.6
423
Tumor
-0.6
481
Tumor
-0.6
298
Normal
-0.6
448
Normal
-0.6
911
Tumor
-0.6
1025
Tumor
-0.6
284
Normal
-0.6
124
Normal
-0.6
955
Tumor
-0.6
353
Tumor
-0.6
365
Tumor
-0.6
954
Normal
-0.6
563
Tumor
-0.6
111
Normal
-0.7
514
Normal
-0.7
1016
Normal
-0.7
384
Normal
-0.7
1014
Normal
-0.7
958
Normal
-0.7
568
Normal
-0.7
1026
Normal
-0.7
982
Normal
-0.7
968
Normal
-0.7
913
Tumor
-0.7
468
Normal
-0.7
858
Normal
-0.7
232
Normal
-0.7
698
Normal
-0.7
915
Tumor
-0.7
513
Tumor
-0.7
461
Tumor
-0.7
518
Normal
-0.7
214
Normal
-0.8
956
Normal
-0.8
867
Tumor
-0.8
1042
Normal
-0.8
536
Normal
-0.8
188
Normal
-0.8
376
Normal
-0.8
145
Tumor
-0.8
126
Normal
-0.8
785
Tumor
-0.8
456
Normal
-0.8
422
Normal
-0.8
742
Normal
-0.8
172
Normal
-0.8
464
Normal
-0.8
516
Normal
-0.8
396
Normal
-0.8
615
Tumor
-0.8
494
Normal
-0.8
354
Normal
-0.8
358
Normal
-0.8
386
Normal
-0.8
1044
Normal
-0.8
538
Normal
-0.8
432
Normal
-0.8
114
Normal
-0.8
488
Normal
-0.8
388
Normal
-0.8
492
Normal
-0.8
444
Normal
-0.8
395
Tumor
-0.8
258
Normal
-0.8
564
Normal
-0.9
436
Normal
-0.9
477
Tumor
-0.9
515
Tumor
-0.9
162
Normal
-0.9
366
Normal
-0.9
262
Normal
-0.9
574
Normal
-0.9
428
Normal
-0.9
228
Normal
-0.9
862
Normal
-0.9
344
Normal
-0.9
424
Normal
-0.9
426
Normal
-0.9
224
Normal
-0.9
414
Normal
-0.9
1028
Normal
-0.9
786
Normal
-0.9
272
Normal
-0.9
416
Normal
-0.9
482
Normal
-0.9
478
Normal
-0.9
362
Normal
-0.9
756
Normal
-0.9
186
Normal
-0.9
192
Normal
-0.9
1022
Normal
-0.9
128
Normal
-0.9
818
Normal
-0.9
1046
Normal
-0.9
926
Normal
-1.0
635
Tumor
-1.0
696
Normal
-1.0
1032
Normal
-1.0
484
Normal
-1.0
446
Normal
-1.0
1045
Tumor
-1.0
884
Normal
-1.0
342
Normal
-1.0
392
Normal
-1.0
268
Normal
-1.0
394
Normal
-1.0
148
Normal
-1.0
922
Normal
-1.0
212
Normal
-1.0
863
Tumor
-1.0
914
Normal
-1.0
472
Normal
-1.0
546
Normal
-1.0
364
Normal
-1.0
723
Tumor
-1.0
916
Normal
-1.1
474
Normal
-1.1
327
Tumor
-1.1
528
Normal
-1.1
882
Normal
-1.1
728
Normal
-1.1
912
Normal
-1.1
714
Normal
-1.1
466
Normal
-1.1
738
Normal
-1.1
452
Normal
-1.1
617
Tumor
-1.1
328
Normal
-1.1
778
Normal
-1.1
462
Normal
-1.1
824
Normal
-1.1
558
Normal
-1.2
744
Normal
-1.2
356
Normal
-1.2
746
Normal
-1.2
412
Normal
-1.2
878
Normal
-1.2
286
Normal
-1.2
816
Normal
-1.2
196
Normal
-1.2
572
Normal
-1.2
534
Normal
-1.2
554
Normal
-1.2
852
Normal
-1.2
722
Normal
-1.3
222
Normal
-1.3
218
Normal
-1.3
642
Normal
-1.3
636
Normal
-1.3
874
Normal
-1.3
918
Normal
-1.3
864
Normal
-1.3
627
Tumor
-1.3
868
Normal
-1.4
137
Tumor
-1.4
618
Normal
-1.4
716
Normal
-1.4
132
Normal
-1.5
142
Normal
-1.6
628
Normal
-1.6
686
Normal
-1.6
616
Normal
-1.8
138
Normal
-1.8
136
Normal
-1.9
146
Normal
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.