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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
239.1
nTPM
FANTOM5:
295.6
Scaled Tags Per Million
Pig:
290.3
nTPM
Allen mouse:
17.9
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
239.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 60.4
2301
Female, age 85, both hemispheres
86.8
2090
Male, age 80, both hemispheres
59.3
2188
Female, age 91, both hemispheres
55.6
1984
Male, age 76, both hemispheres
39.9
Dorsal cochlear nucleus nTPM: 86.1
2187
Female, age 91, both hemispheres
124.2
2058
Male, age 76, both hemispheres
106.7
2370
Male, age 61, both hemispheres
105.7
2378
Male, age 80, both hemispheres
47.8
2802
Male, age 74, right hemisphere
46.2
Dorsal tegmental nucleus nTPM: 91.5
2083
Male, age 80, both hemispheres
108.2
1936
Male, age 76, left hemisphere
91.3
2358
Male, age 61, both hemispheres
87.5
2326
Male, age 74, both hemispheres
79.1
Dorsolateral tegmental area nTPM: 103.6
2141
Male, age 76, both hemispheres
172.3
2751
Female, age 85, both hemispheres
109.4
2654
Male, age 80, both hemispheres
103.9
2360
Male, age 74, both hemispheres
99.6
2337
Male, age 61, both hemispheres
32.6
Kolliker-Fuse nucleus nTPM: 71.1
2163
Male, age 80, both hemispheres
93.0
2793
Female, age 91, left hemisphere
66.6
2315
Male, age 76, right hemisphere
53.7
Lateral lemniscal nuclei nTPM: 102.1
2036
Male, age 80, both hemispheres
141.4
2169
Male, age 76, both hemispheres
111.0
2453
Male, age 74, right hemisphere
101.1
2746
Female, age 85, left hemisphere
93.5
2320
Female, age 91, left hemisphere
63.4
Lateral parabrachial nucleus nTPM: 86.9
2139
Female, age 85, right hemisphere
114.9
2790
Male, age 61, both hemispheres
110.3
2013
Male, age 80, both hemispheres
85.8
2792
Male, age 76, both hemispheres
36.5
Lateral vestibular nucleus nTPM: 78.9
2311
Male, age 80, both hemispheres
81.6
2184
Male, age 76, both hemispheres
76.2
Locus coeruleus nTPM: 239.1
2720
Male, age 74, both hemispheres
327.0
2123
Female, age 91, both hemispheres
288.9
2014
Male, age 55, unknown
238.8
1980
Male, age 76, both hemispheres
225.4
2788
Male, age 74, unknown
209.7
2317
Female, age 72, unknown
194.4
2162
Male, age 80, both hemispheres
189.5
Medial parabrachial nucleus nTPM: 113.3
2170
Female, age 91, both hemispheres
146.2
2786
Male, age 76, both hemispheres
124.5
2854
Male, age 80, both hemispheres
113.9
2156
Male, age 61, both hemispheres
100.5
2463
Female, age 85, right hemisphere
81.6
Medial periolivary nuclei nTPM: 86.4
2171
Female, age 85, both hemispheres
120.9
2063
Male, age 76, both hemispheres
108.0
2791
Male, age 74, right hemisphere
102.0
2081
Male, age 80, both hemispheres
54.3
2458
Female, age 91, both hemispheres
46.6
Motor facial nucleus nTPM: 95.9
2365
Male, age 74, right hemisphere
115.5
2062
Male, age 76, both hemispheres
113.0
2327
Male, age 80, both hemispheres
95.3
2697
Female, age 85, both hemispheres
93.6
2126
Male, age 61, both hemispheres
93.1
2795
Female, age 91, both hemispheres
65.0
Motor trigeminal nucleus nTPM: 95.6
2335
Male, age 61, both hemispheres
115.2
2309
Male, age 76, both hemispheres
109.3
2560
Male, age 74, both hemispheres
97.4
2079
Male, age 80, both hemispheres
85.1
2321
Female, age 91, both hemispheres
70.8
Nuclei of the trapezoid body nTPM: 102.6
2735
Female, age 85, both hemispheres
139.5
2159
Male, age 61, both hemispheres
135.5
1983
Male, age 76, both hemispheres
99.9
2166
Male, age 80, both hemispheres
78.6
2368
Female, age 91, both hemispheres
59.3
Nucleus raphe magnus nTPM: 112.3
2160
Male, age 61, both hemispheres
167.5
2455
Male, age 74, both hemispheres
149.8
2172
Female, age 85, both hemispheres
141.0
2328
Male, age 80, both hemispheres
89.9
2051
Male, age 76, both hemispheres
68.6
2459
Female, age 91, both hemispheres
56.9
Paramedian reticular nucleus nTPM: 124.1
2313
Male, age 61, both hemispheres
174.9
2050
Female, age 85, both hemispheres
139.6
2057
Male, age 80, both hemispheres
112.4
2052
Male, age 76, both hemispheres
69.7
Pedunculopontine tegmental nucleus nTPM: 132.3
1921
Female, age 85, both hemispheres
184.5
2334
Male, age 80, both hemispheres
136.2
2338
Male, age 61, both hemispheres
76.3
Pontine nuclei nTPM: 90.7
2787
Female, age 85, both hemispheres
145.7
2727
Male, age 61, right hemisphere
123.0
1863
Male, age 55, unknown
99.5
1968
Male, age 76, left hemisphere
90.1
2454
Male, age 74, left hemisphere
81.9
2109
Female, age 72, unknown
75.5
2115
Male, age 80, left hemisphere
55.4
2319
Female, age 91, both hemispheres
54.3
Pontine raphe nucleus nTPM: 168.9
2853
Male, age 76, midline
196.9
2122
Female, age 85, midline
140.9
Posteroventral cochlear nucleus nTPM: 74.7
2752
Female, age 85, both hemispheres
162.2
2070
Male, age 76, both hemispheres
97.0
2371
Male, age 61, both hemispheres
71.6
2135
Female, age 91, both hemispheres
24.1
2341
Male, age 80, both hemispheres
18.7
Principal sensory trigeminal nucleus nTPM: 98.6
2158
Male, age 61, both hemispheres
150.0
2008
Male, age 80, left hemisphere
117.5
2324
Male, age 76, both hemispheres
73.7
2367
Female, age 91, left hemisphere
53.2
Reticular pontine nucleus, caudal nTPM: 73.8
2332
Male, age 80, right hemisphere
91.1
2559
Male, age 74, both hemispheres
80.6
2092
Male, age 76, both hemispheres
79.1
2457
Female, age 91, both hemispheres
44.6
Reticular pontine nucleus, oral nTPM: 101.9
2167
Male, age 76, both hemispheres
126.3
2012
Female, age 85, both hemispheres
123.1
1939
Male, age 80, both hemispheres
103.9
2361
Male, age 74, both hemispheres
95.6
2366
Female, age 91, both hemispheres
60.7
Reticulotegmental nucleus nTPM: 99.8
2325
Male, age 76, both hemispheres
132.3
2452
Male, age 74, both hemispheres
96.7
2322
Female, age 91, both hemispheres
91.0
2333
Male, age 80, both hemispheres
79.2
Spinal trigeminal nucleus, oral nTPM: 101.6
1978
Male, age 76, both hemispheres
120.8
2737
Female, age 85, both hemispheres
112.7
2164
Male, age 80, both hemispheres
71.3
Subcoeruleus area nTPM: 128.1
2323
Female, age 91, left hemisphere
201.5
1958
Male, age 80, both hemispheres
128.5
2451
Male, age 74, both hemispheres
127.8
2089
Male, age 76, left hemisphere
93.0
2369
Female, age 85, left hemisphere
89.4
Superior olive nTPM: 97.7
1875
Female, age 85, both hemispheres
136.2
2364
Male, age 74, right hemisphere
110.0
2020
Male, age 76, both hemispheres
91.0
2329
Male, age 80, right hemisphere
78.4
2561
Female, age 91, both hemispheres
73.0
Ventral periolivary nuclei nTPM: 105.3
2130
Female, age 85, both hemispheres
155.2
2165
Male, age 80, both hemispheres
96.9
2794
Female, age 91, left hemisphere
86.3
2023
Male, age 76, both hemispheres
82.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 94.9
2359
Male, age 61, both hemispheres
128.7
2449
Male, age 74, both hemispheres
124.1
2840
Female, age 85, both hemispheres
109.5
1959
Male, age 76, both hemispheres
91.4
2161
Male, age 80, both hemispheres
73.2
2456
Female, age 91, both hemispheres
42.7
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
290.3
Pig sample
Sample description
nTPM
Pons nTPM: 290.3
Samples: 4
Max nTPM: 437.2
Min nTPM: 156.0
Sample A
Female
437.2
Sample B
Female
288.7
Sample C
Male
279.3
Sample D
Male
156.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.