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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
105.5
nTPM
HPA Brain:
197.3
nTPM
GTEx:
105.5
nTPM
FANTOM5:
24.1
Scaled Tags Per Million
Pig:
258.9
nTPM
Mouse:
390.3
nTPM
Allen mouse:
29.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
197.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 107.4
2219
Male, age 76, both hemispheres
143.0
1827
Male, age 72, unknown
137.0
2411
Female, age 72, unknown
123.3
1870
Female, age 42, unknown
120.5
1833
Male, age 53, unknown
119.4
2666
Male, age 74, left hemisphere
108.7
1830
Male, age 51, unknown
92.8
2828
Female, age 72, unknown
86.4
2586
Male, age 75, left hemisphere
80.0
2019
Male, age 18, unknown
63.1
Dorsal raphe nucleus nTPM: 131.5
2298
Female, age 72, unknown
197.7
2750
Male, age 76, both hemispheres
145.5
2047
Male, age 72, unknown
138.7
2016
Female, age 72, unknown
90.0
1828
Male, age 53, unknown
85.4
Inferior colliculus nTPM: 141.0
2097
Female, age 72, unknown
172.9
2849
Male, age 72, unknown
139.7
1848
Female, age 42, unknown
129.4
1890
Male, age 53, unknown
122.0
Median raphe nucleus nTPM: 197.3
2220
Male, age 76, midline
197.3
Periaquaductal grey, anterior nTPM: 191.2
2502
Female, age 75, unknown
265.9
1795
Male, age 51, unknown
158.6
1947
Male, age 18, unknown
149.0
Periaquaductal grey, dorsal nTPM: 156.3
1840
Male, age 53, unknown
201.7
1831
Male, age 72, unknown
167.1
2850
Male, age 76, both hemispheres
139.3
2464
Female, age 72, unknown
117.2
Periaquaductal grey, lateral nTPM: 127.3
2053
Male, age 18, unknown
167.3
2140
Male, age 76, both hemispheres
134.6
2272
Male, age 74, both hemispheres
80.0
Pretectal area nTPM: 162.0
2667
Female, age 75, unknown
309.4
1944
Female, age 72, unknown
234.4
1816
Male, age 51, unknown
223.5
2224
Female, age 72, unknown
198.9
2825
Male, age 18, unknown
173.1
1817
Female, age 42, unknown
134.6
1815
Male, age 53, unknown
132.4
2316
Male, age 76, right hemisphere
120.8
2407
Male, age 75, both hemispheres
103.3
2007
Male, age 72, unknown
89.4
2273
Male, age 74, both hemispheres
62.1
Red nucleus nTPM: 74.9
2584
Male, age 75, left hemisphere
99.5
1821
Female, age 72, unknown
90.2
1954
Female, age 42, unknown
86.8
2503
Female, age 72, unknown
80.7
2769
Male, age 72, unknown
79.8
2227
Male, age 72, unknown
76.0
1904
Male, age 53, unknown
75.1
2588
Male, age 74, left hemisphere
74.1
2823
Male, age 76, right hemisphere
65.8
1865
Male, age 51, unknown
58.1
2785
Male, age 18, unknown
56.9
2725
Female, age 75, unknown
56.2
Substantia nigra nTPM: 135.7
1916
Female, age 42, unknown
202.8
2665
Male, age 74, both hemispheres
175.4
2241
Male, age 72, unknown
158.0
1851
Male, age 51, unknown
150.1
1889
Female, age 72, unknown
140.7
2699
Male, age 18, unknown
134.2
1941
Male, age 53, unknown
132.1
2409
Female, age 72, unknown
129.9
2583
Male, age 75, right hemisphere
71.7
2590
Female, age 75, unknown
61.8
Superior colliculus nTPM: 130.0
2087
Female, age 72, unknown
196.4
2261
Male, age 18, unknown
195.4
1796
Male, age 53, unknown
144.3
1895
Male, age 76, right hemisphere
140.6
1839
Male, age 51, unknown
127.2
2668
Female, age 75, unknown
111.6
1913
Female, age 42, unknown
100.2
2664
Male, age 75, both hemispheres
98.1
1995
Male, age 72, unknown
94.6
2587
Male, age 74, left hemisphere
91.2
Ventral tegmental area nTPM: 149.2
2218
Male, age 76, both hemispheres
188.5
2410
Female, age 72, unknown
167.0
1915
Female, age 42, unknown
159.2
2021
Male, age 53, unknown
149.6
1942
Male, age 51, unknown
134.2
2223
Female, age 72, unknown
96.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
105.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 105.5
Samples: 139
Max nTPM: 294.0
Min nTPM: 7.3
Std nTPM: 66.2
Median nTPM: 95.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
294.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
289.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
281.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
253.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
237.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
233.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
226.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
225.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
224.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
217.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
214.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
208.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
206.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
203.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
200.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
198.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
196.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
192.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
190.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
184.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
180.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
177.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
176.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
176.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
171.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
166.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
163.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
156.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
156.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
155.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
155.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
151.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
143.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
143.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
142.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
139.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
138.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
137.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
135.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
135.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
134.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
134.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
133.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
132.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
132.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
131.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
130.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
130.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
130.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
126.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
126.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
124.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
124.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
123.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
122.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
121.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
120.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
119.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
119.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
118.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
115.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
113.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
111.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
107.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
104.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
104.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
99.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
98.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
97.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
95.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
95.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
94.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
91.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
88.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
88.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
84.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
84.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
83.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
83.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
81.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
80.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
77.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
77.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
75.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
75.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
73.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
73.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
71.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
71.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
70.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
63.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
61.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
60.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
58.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
57.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
57.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
57.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
55.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
54.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
53.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
51.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
51.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
50.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
50.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
46.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
45.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
45.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
41.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
41.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
40.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
40.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
40.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
40.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
39.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
39.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
38.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
38.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
38.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
38.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
35.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
34.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
33.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
31.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
31.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
30.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
26.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
26.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
26.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
25.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
25.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
24.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
22.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
20.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
19.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
16.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
14.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
13.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
11.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
7.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
390.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 390.3
Samples: 4
Max nTPM: 398.8
Min nTPM: 383.3
Sample A
Male
398.8
Sample B
Male
391.7
Sample C
Female
383.3
Sample D
Female
387.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.