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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
149.0
nTPM
HPA Brain:
281.1
nTPM
GTEx:
149.0
nTPM
FANTOM5:
357.4
Scaled Tags Per Million
Pig:
478.2
nTPM
Mouse:
672.6
nTPM
Allen mouse:
35.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA056191
Glial cells
Not detected
Neuronal cells
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
281.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 213.6
1898
Male, age 80, left hemisphere
280.6
2621
Female, age 67, right hemisphere
278.1
1855
Male, age 76, left hemisphere
267.2
2148
Female, age 91, left hemisphere
201.1
1911
Female, age 85, right hemisphere
144.9
2529
Female, age 94, left hemisphere
109.5
Dentate gyrus nTPM: 242.8
1927
Female, age 91, both hemispheres
320.5
2010
Male, age 76, both hemispheres
243.0
2531
Female, age 67, both hemispheres
237.1
2246
Female, age 85, both hemispheres
232.5
2530
Female, age 94, left hemisphere
229.7
2528
Male, age 74, both hemispheres
193.8
Entorhinal gyrus nTPM: 199.6
2613
Female, age 94, left hemisphere
286.5
1938
Female, age 85, left hemisphere
259.4
1787
Male, age 76, left hemisphere
212.5
2764
Male, age 80, right hemisphere
197.4
2117
Female, age 91, right hemisphere
123.1
2686
Male, age 75, right hemisphere
118.9
Hippocampus, CA1 nTPM: 260.3
2045
Male, age 76, both hemispheres
323.7
2749
Male, age 80, left hemisphere
297.5
1873
Female, age 85, both hemispheres
253.9
2082
Female, age 91, right hemisphere
229.3
2527
Male, age 74, both hemispheres
197.1
Hippocampus, CA2 nTPM: 206.2
1892
Male, age 76, both hemispheres
290.6
1963
Male, age 80, left hemisphere
240.5
2437
Female, age 94, left hemisphere
212.3
2113
Female, age 91, right hemisphere
173.6
1940
Female, age 85, left hemisphere
164.6
2249
Male, age 74, both hemispheres
155.4
Hippocampus, CA3 nTPM: 212.1
2620
Female, age 94, left hemisphere
269.9
2861
Female, age 67, both hemispheres
242.1
2137
Male, age 80, left hemisphere
207.9
1867
Male, age 76, both hemispheres
201.1
2436
Male, age 74, both hemispheres
198.5
1891
Female, age 85, both hemispheres
152.9
Parahippocampal cortex nTPM: 204.6
2250
Female, age 67, right hemisphere
308.2
1933
Female, age 85, both hemispheres
233.4
2693
Female, age 94, both hemispheres
233.3
2245
Female, age 91, both hemispheres
232.3
1990
Female, age 91, right hemisphere
215.1
1850
Male, age 80, both hemispheres
200.5
2018
Male, age 76, both hemispheres
175.5
2622
Female, age 67, right hemisphere
163.7
2532
Female, age 72, left hemisphere
147.3
2692
Male, age 74, both hemispheres
137.2
Perirhinal gyrus nTPM: 281.1
1847
Female, age 91, left hemisphere
435.5
2521
Female, age 94, right hemisphere
310.1
1794
Male, age 80, right hemisphere
242.4
1841
Female, age 85, right hemisphere
215.0
2848
Male, age 76, right hemisphere
202.6
Subiculum nTPM: 162.5
1977
Female, age 85, both hemispheres
214.3
2438
Female, age 94, left hemisphere
172.4
1901
Male, age 80, both hemispheres
163.4
2729
Female, age 91, right hemisphere
159.0
2619
Male, age 74, both hemispheres
152.2
2042
Male, age 76, both hemispheres
113.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
149.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 149.0
Samples: 197
Max nTPM: 420.3
Min nTPM: 2.7
Std nTPM: 81.1
Median nTPM: 136.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
420.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
357.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
352.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
348.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
347.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
339.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
319.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
313.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
312.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
295.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
285.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
282.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
274.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
262.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
261.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
261.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
255.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
253.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
249.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
248.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
247.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
243.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
243.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
243.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
239.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
236.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
236.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
232.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
232.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
229.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
227.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
227.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
226.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
225.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
222.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
220.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
220.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
219.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
217.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
217.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
216.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
213.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
213.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
213.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
211.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
210.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
209.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
209.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
208.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
207.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
206.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
203.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
203.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
202.9
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
202.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
201.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
200.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
198.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
194.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
194.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
193.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
192.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
191.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
190.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
190.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
189.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
189.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
188.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
186.4
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
186.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
185.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
181.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
179.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
178.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
176.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
175.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
175.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
173.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
170.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
168.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
167.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
165.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
165.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
164.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
163.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
161.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
156.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
155.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
154.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
154.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
154.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
153.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
152.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
146.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
144.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
141.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
141.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
140.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
136.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
135.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
135.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
134.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
134.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
132.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
131.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
130.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
129.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
129.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
125.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
124.5
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
124.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
122.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
121.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
121.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
119.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
119.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
118.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
117.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
117.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
115.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
113.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
112.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
111.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
111.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
111.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
111.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
109.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
107.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
106.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
105.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
104.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
104.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
104.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
102.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
101.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
100.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
99.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
98.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
97.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
97.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
94.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
90.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
88.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
86.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
86.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
85.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
84.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
83.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
80.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
79.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
78.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
76.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
74.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
72.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
72.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
72.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
70.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
68.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
68.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
67.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
67.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
65.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
65.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
64.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
64.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
62.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
62.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
60.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
59.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
59.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
57.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
57.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
53.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
53.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
52.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
50.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
49.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
49.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
49.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
46.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
44.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
44.8
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
42.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
41.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
40.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
39.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
36.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
36.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
36.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
28.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
26.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
26.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
22.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
21.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
18.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
13.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
2.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
672.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 625.1
Samples: 4
Max nTPM: 709.4
Min nTPM: 539.4
Sample A
Male
539.4
Sample B
Male
603.1
Sample C
Female
648.6
Sample D
Female
709.4
Hippocampal formation nTPM: 672.7
Samples: 4
Max nTPM: 746.5
Min nTPM: 622.4
Sample A
Male
746.5
Sample B
Male
676.9
Sample C
Female
644.8
Sample D
Female
622.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.