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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
78.5
nTPM
HPA Brain:
98.4
nTPM
GTEx:
78.5
nTPM
FANTOM5:
155.4
Scaled Tags Per Million
Pig:
95.4
nTPM
Mouse:
93.0
nTPM
Allen mouse:
0.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA003303
Antibody HPA030445
Glial cells
Not detected
Not detected
Neuronal cells
Medium
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
98.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 86.0
1898
Male, age 80, left hemisphere
97.9
1855
Male, age 76, left hemisphere
91.7
2148
Female, age 91, left hemisphere
91.6
2621
Female, age 67, right hemisphere
82.3
1911
Female, age 85, right hemisphere
80.8
2529
Female, age 94, left hemisphere
71.7
Dentate gyrus nTPM: 80.4
2010
Male, age 76, both hemispheres
92.4
1927
Female, age 91, both hemispheres
89.4
2531
Female, age 67, both hemispheres
86.0
2530
Female, age 94, left hemisphere
79.8
2246
Female, age 85, both hemispheres
71.6
2528
Male, age 74, both hemispheres
63.2
Entorhinal gyrus nTPM: 70.6
1938
Female, age 85, left hemisphere
82.4
2764
Male, age 80, right hemisphere
77.4
2117
Female, age 91, right hemisphere
76.3
2613
Female, age 94, left hemisphere
72.1
1787
Male, age 76, left hemisphere
60.4
2686
Male, age 75, right hemisphere
54.8
Hippocampus, CA1 nTPM: 98.4
2749
Male, age 80, left hemisphere
152.4
1873
Female, age 85, both hemispheres
96.1
2527
Male, age 74, both hemispheres
90.6
2045
Male, age 76, both hemispheres
89.4
2082
Female, age 91, right hemisphere
63.6
Hippocampus, CA2 nTPM: 84.8
1892
Male, age 76, both hemispheres
110.6
1963
Male, age 80, left hemisphere
107.2
2249
Male, age 74, both hemispheres
86.8
2437
Female, age 94, left hemisphere
74.2
2113
Female, age 91, right hemisphere
65.4
1940
Female, age 85, left hemisphere
64.5
Hippocampus, CA3 nTPM: 87.6
2137
Male, age 80, left hemisphere
115.3
2620
Female, age 94, left hemisphere
104.5
1867
Male, age 76, both hemispheres
81.0
2861
Female, age 67, both hemispheres
77.5
1891
Female, age 85, both hemispheres
74.1
2436
Male, age 74, both hemispheres
73.0
Parahippocampal cortex nTPM: 70.3
2245
Female, age 91, both hemispheres
82.6
2693
Female, age 94, both hemispheres
82.5
2018
Male, age 76, both hemispheres
75.4
1933
Female, age 85, both hemispheres
72.7
1850
Male, age 80, both hemispheres
71.4
2250
Female, age 67, right hemisphere
69.7
2532
Female, age 72, left hemisphere
68.7
1990
Female, age 91, right hemisphere
64.4
2622
Female, age 67, right hemisphere
62.3
2692
Male, age 74, both hemispheres
53.4
Perirhinal gyrus nTPM: 68.9
1841
Female, age 85, right hemisphere
74.0
1847
Female, age 91, left hemisphere
72.2
1794
Male, age 80, right hemisphere
72.1
2521
Female, age 94, right hemisphere
70.5
2848
Male, age 76, right hemisphere
55.9
Subiculum nTPM: 76.7
1901
Male, age 80, both hemispheres
91.8
2729
Female, age 91, right hemisphere
83.2
1977
Female, age 85, both hemispheres
80.8
2042
Male, age 76, both hemispheres
74.8
2619
Male, age 74, both hemispheres
67.9
2438
Female, age 94, left hemisphere
61.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
78.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 78.5
Samples: 197
Max nTPM: 170.1
Min nTPM: 27.5
Std nTPM: 21.6
Median nTPM: 76.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
170.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
136.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
130.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
125.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
123.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
122.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
121.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
120.3
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
118.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
116.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
114.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
113.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
112.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
111.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
110.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
110.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
109.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
108.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
106.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
106.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
105.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
105.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
105.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
104.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
104.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
103.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
102.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
101.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
101.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
101.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
100.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
100.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
99.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
99.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
99.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
99.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
99.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
99.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
98.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
96.8
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
96.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
96.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
96.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
95.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
95.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
95.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
94.9
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
92.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
92.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
91.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
91.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
91.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
91.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
90.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
90.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
90.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
90.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
89.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
89.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
89.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
88.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
88.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
87.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
87.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
86.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
86.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
86.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
86.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
85.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
85.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
85.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
84.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
84.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
84.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
84.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
83.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
83.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
83.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
83.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
83.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
82.6
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
82.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
82.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
81.9
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
81.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
81.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
80.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
80.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
79.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
79.1
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
79.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
79.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
78.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
78.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
77.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
77.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
77.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
77.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
76.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
76.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
76.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
76.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
76.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
75.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
75.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
75.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
74.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
74.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
73.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
73.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
73.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
72.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
72.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
72.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
71.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
70.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
70.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
70.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
70.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
69.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
69.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
68.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
68.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
68.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
67.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
67.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
67.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
67.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
67.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
66.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
66.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
66.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
66.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
65.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
65.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
65.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
65.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
64.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
64.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
64.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
64.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
64.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
63.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
62.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
62.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
61.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
61.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
61.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
61.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
60.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
60.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
60.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
59.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
58.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
58.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
57.8
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
57.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
57.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
57.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
57.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
57.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
57.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
57.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
57.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
56.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
56.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
56.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
56.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
55.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
55.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
55.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
55.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
55.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
55.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
54.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
54.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
54.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
53.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
52.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
52.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
52.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
52.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
52.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
50.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
49.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
49.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
49.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
48.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
47.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
47.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
47.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
45.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
45.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
44.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
41.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
36.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
27.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
93.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 93.0
Samples: 4
Max nTPM: 103.0
Min nTPM: 84.1
Sample A
Male
84.1
Sample B
Male
94.9
Sample C
Female
90.1
Sample D
Female
103.0
Hippocampal formation nTPM: 83.0
Samples: 4
Max nTPM: 92.5
Min nTPM: 75.5
Sample A
Male
92.5
Sample B
Male
80.2
Sample C
Female
83.8
Sample D
Female
75.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.