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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
25.5
nTPM
HPA Brain:
43.5
nTPM
GTEx:
25.5
nTPM
FANTOM5:
97.1
Scaled Tags Per Million
Pig:
40.9
nTPM
Mouse:
41.5
nTPM
Allen mouse:
0.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody CAB017544
Glial cells
High
Neuronal cells
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
43.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 22.4
1898
Male, age 80, left hemisphere
35.4
1855
Male, age 76, left hemisphere
29.8
1911
Female, age 85, right hemisphere
23.2
2621
Female, age 67, right hemisphere
18.2
2529
Female, age 94, left hemisphere
14.7
2148
Female, age 91, left hemisphere
12.9
Dentate gyrus nTPM: 22.6
2246
Female, age 85, both hemispheres
29.4
1927
Female, age 91, both hemispheres
26.4
2010
Male, age 76, both hemispheres
24.6
2530
Female, age 94, left hemisphere
23.5
2531
Female, age 67, both hemispheres
18.2
2528
Male, age 74, both hemispheres
13.8
Entorhinal gyrus nTPM: 22.2
1938
Female, age 85, left hemisphere
34.7
2613
Female, age 94, left hemisphere
25.6
2764
Male, age 80, right hemisphere
24.0
1787
Male, age 76, left hemisphere
22.3
2686
Male, age 75, right hemisphere
16.8
2117
Female, age 91, right hemisphere
9.9
Hippocampus, CA1 nTPM: 21.6
2749
Male, age 80, left hemisphere
37.7
1873
Female, age 85, both hemispheres
29.6
2082
Female, age 91, right hemisphere
14.0
2045
Male, age 76, both hemispheres
13.5
2527
Male, age 74, both hemispheres
13.2
Hippocampus, CA2 nTPM: 25.3
1892
Male, age 76, both hemispheres
43.0
1940
Female, age 85, left hemisphere
32.1
2437
Female, age 94, left hemisphere
27.9
1963
Male, age 80, left hemisphere
19.4
2113
Female, age 91, right hemisphere
16.8
2249
Male, age 74, both hemispheres
12.6
Hippocampus, CA3 nTPM: 25.7
2137
Male, age 80, left hemisphere
45.2
1867
Male, age 76, both hemispheres
28.2
1891
Female, age 85, both hemispheres
22.2
2861
Female, age 67, both hemispheres
21.9
2620
Female, age 94, left hemisphere
19.9
2436
Male, age 74, both hemispheres
16.9
Parahippocampal cortex nTPM: 27.2
2245
Female, age 91, both hemispheres
39.0
2532
Female, age 72, left hemisphere
38.9
1850
Male, age 80, both hemispheres
34.3
2693
Female, age 94, both hemispheres
31.7
1933
Female, age 85, both hemispheres
27.9
2018
Male, age 76, both hemispheres
27.6
1990
Female, age 91, right hemisphere
22.7
2250
Female, age 67, right hemisphere
21.6
2622
Female, age 67, right hemisphere
18.8
2692
Male, age 74, both hemispheres
9.3
Perirhinal gyrus nTPM: 43.5
1841
Female, age 85, right hemisphere
51.2
2521
Female, age 94, right hemisphere
44.3
1794
Male, age 80, right hemisphere
42.1
2848
Male, age 76, right hemisphere
41.5
1847
Female, age 91, left hemisphere
38.7
Subiculum nTPM: 19.1
1901
Male, age 80, both hemispheres
28.3
1977
Female, age 85, both hemispheres
26.7
2042
Male, age 76, both hemispheres
21.9
2438
Female, age 94, left hemisphere
18.7
2619
Male, age 74, both hemispheres
10.6
2729
Female, age 91, right hemisphere
8.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
25.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 25.5
Samples: 197
Max nTPM: 93.5
Min nTPM: 1.5
Std nTPM: 16.3
Median nTPM: 22.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
93.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
83.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
71.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
69.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
69.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
59.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
59.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
58.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
57.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
56.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
54.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
53.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
53.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
52.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
52.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
49.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
47.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
47.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
47.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
46.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
46.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
45.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
45.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
45.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
44.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
44.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
44.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
44.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
43.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
43.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
43.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
42.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
40.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
40.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
40.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
39.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
38.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
38.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
38.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
38.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
38.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
37.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
37.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
36.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
36.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
36.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
36.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
35.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
35.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
34.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
34.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
34.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
33.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
33.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
33.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
33.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
33.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
33.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
33.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
33.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
32.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
32.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
30.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
30.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
30.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
30.0
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
29.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
29.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
29.8
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
29.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
29.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
29.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
29.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
29.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
28.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
28.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
28.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
28.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
27.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
26.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
26.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
26.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
26.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
26.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
26.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
25.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
25.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
24.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
24.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
24.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
24.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
24.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
24.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
23.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
23.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
23.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
23.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
23.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
22.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
22.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
22.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
22.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
21.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
21.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
21.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
21.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
21.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
21.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
21.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
21.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
20.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
20.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
20.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
20.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
19.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
19.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
19.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
18.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
18.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
18.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
17.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
17.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
17.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
17.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
17.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
17.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
17.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
16.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
16.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
16.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
16.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
16.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
16.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
15.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
15.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
15.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
15.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
14.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
14.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
13.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
13.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
13.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
13.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
13.2
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
13.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
13.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
13.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
12.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
12.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
12.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
12.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
12.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
11.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
11.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
11.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
10.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
10.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
10.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
10.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
9.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
9.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
8.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
8.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
8.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
8.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
8.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
8.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
7.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
7.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
7.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
7.5
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
7.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
7.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
7.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
7.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
7.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
7.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
6.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
6.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
6.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
6.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
6.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
6.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
6.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
6.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
6.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
5.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
5.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
5.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
5.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
4.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
4.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
4.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
4.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
3.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
3.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
1.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 41.5
Samples: 4
Max nTPM: 45.3
Min nTPM: 39.3
Sample A
Male
45.3
Sample B
Male
41.4
Sample C
Female
39.9
Sample D
Female
39.3
Hippocampal formation nTPM: 23.6
Samples: 4
Max nTPM: 30.2
Min nTPM: 13.2
Sample A
Male
30.2
Sample B
Male
25.7
Sample C
Female
13.2
Sample D
Female
25.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.