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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
38.8
nTPM
HPA Brain:
34.7
nTPM
GTEx:
38.8
nTPM
FANTOM5:
0.0
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 25.1
2586
Male, age 75, left hemisphere
31.7
2411
Female, age 72, unknown
30.0
1827
Male, age 72, unknown
27.6
1830
Male, age 51, unknown
27.5
2828
Female, age 72, unknown
25.5
2219
Male, age 76, both hemispheres
23.4
1870
Female, age 42, unknown
22.9
2666
Male, age 74, left hemisphere
22.2
1833
Male, age 53, unknown
21.7
2019
Male, age 18, unknown
18.2
Dorsal raphe nucleus nTPM: 25.0
1828
Male, age 53, unknown
31.2
2750
Male, age 76, both hemispheres
29.6
2047
Male, age 72, unknown
24.6
2016
Female, age 72, unknown
20.1
2298
Female, age 72, unknown
19.6
Inferior colliculus nTPM: 20.1
2097
Female, age 72, unknown
23.1
2849
Male, age 72, unknown
22.8
1848
Female, age 42, unknown
17.3
1890
Male, age 53, unknown
17.3
Median raphe nucleus nTPM: 22.7
2220
Male, age 76, midline
22.7
Periaquaductal grey, anterior nTPM: 18.4
1947
Male, age 18, unknown
23.8
1795
Male, age 51, unknown
19.4
2502
Female, age 75, unknown
11.9
Periaquaductal grey, dorsal nTPM: 18.5
2464
Female, age 72, unknown
21.4
1831
Male, age 72, unknown
19.8
2850
Male, age 76, both hemispheres
16.5
1840
Male, age 53, unknown
16.3
Periaquaductal grey, lateral nTPM: 14.4
2053
Male, age 18, unknown
19.5
2140
Male, age 76, both hemispheres
16.6
2272
Male, age 74, both hemispheres
7.1
Pretectal area nTPM: 28.3
1944
Female, age 72, unknown
40.9
2007
Male, age 72, unknown
36.8
1815
Male, age 53, unknown
36.1
1816
Male, age 51, unknown
35.1
2667
Female, age 75, unknown
33.5
1817
Female, age 42, unknown
29.6
2407
Male, age 75, both hemispheres
26.7
2224
Female, age 72, unknown
25.4
2825
Male, age 18, unknown
21.6
2316
Male, age 76, right hemisphere
18.5
2273
Male, age 74, both hemispheres
6.5
Red nucleus nTPM: 21.0
2588
Male, age 74, left hemisphere
38.8
2725
Female, age 75, unknown
28.1
2584
Male, age 75, left hemisphere
26.1
2785
Male, age 18, unknown
24.3
1821
Female, age 72, unknown
23.3
2823
Male, age 76, right hemisphere
19.0
1904
Male, age 53, unknown
18.2
2227
Male, age 72, unknown
16.7
2503
Female, age 72, unknown
16.5
1954
Female, age 42, unknown
16.0
1865
Male, age 51, unknown
13.4
2769
Male, age 72, unknown
11.6
Substantia nigra nTPM: 34.7
2409
Female, age 72, unknown
68.5
1916
Female, age 42, unknown
47.9
1941
Male, age 53, unknown
38.5
1889
Female, age 72, unknown
37.5
1851
Male, age 51, unknown
35.3
2241
Male, age 72, unknown
29.2
2583
Male, age 75, right hemisphere
26.0
2665
Male, age 74, both hemispheres
23.4
2699
Male, age 18, unknown
22.9
2590
Female, age 75, unknown
18.1
Superior colliculus nTPM: 21.3
2587
Male, age 74, left hemisphere
28.5
2668
Female, age 75, unknown
28.5
2087
Female, age 72, unknown
24.0
1796
Male, age 53, unknown
22.7
1995
Male, age 72, unknown
22.6
1895
Male, age 76, right hemisphere
22.5
1913
Female, age 42, unknown
21.9
2261
Male, age 18, unknown
19.2
1839
Male, age 51, unknown
17.6
2664
Male, age 75, both hemispheres
5.0
Ventral tegmental area nTPM: 29.4
2223
Female, age 72, unknown
35.5
2218
Male, age 76, both hemispheres
34.5
2410
Female, age 72, unknown
31.2
1915
Female, age 42, unknown
29.7
1942
Male, age 51, unknown
26.5
2021
Male, age 53, unknown
19.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
38.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 38.8
Samples: 139
Max nTPM: 100.5
Min nTPM: 13.5
Std nTPM: 14.5
Median nTPM: 37.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
100.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
95.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
88.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
83.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
81.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
71.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
64.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
60.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
59.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
59.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
58.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
58.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
57.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
53.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
53.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
52.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
52.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
52.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
51.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
49.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
49.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
48.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
48.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
48.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
48.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
48.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
47.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
47.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
46.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
46.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
46.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
45.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
45.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
45.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
44.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
44.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
44.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
44.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
43.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
43.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
43.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
43.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
41.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
41.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
41.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
41.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
40.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
40.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
40.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
40.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
40.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
40.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
39.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
38.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
38.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
38.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
38.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
38.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
38.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
38.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
38.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
38.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
38.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
37.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
37.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
37.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
37.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
37.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
37.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
37.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
36.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
36.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
36.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
36.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
35.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
35.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
35.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
35.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
34.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
34.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
34.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
34.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
34.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
34.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
33.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
33.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
33.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
33.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
32.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
32.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
32.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
32.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
32.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
31.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
31.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
31.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
31.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
31.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
31.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
31.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
31.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
30.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
30.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
30.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
30.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
30.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
29.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
29.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
29.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
29.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
29.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
28.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
28.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
28.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
28.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
27.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
27.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
27.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
25.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
25.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
24.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
24.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
24.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
24.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
23.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
23.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
22.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
22.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
22.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
21.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
21.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
20.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
20.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
19.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
17.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
17.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
16.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
14.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
13.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.