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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
36.8
nTPM
HPA Brain:
26.6
nTPM
GTEx:
36.8
nTPM
FANTOM5:
0.0
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA045380
Antibody HPA046696
Glial cells
Not detected
Not detected
Neuronal cells
Not detected
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 23.9
2621
Female, age 67, right hemisphere
35.8
1898
Male, age 80, left hemisphere
27.6
1855
Male, age 76, left hemisphere
25.2
2529
Female, age 94, left hemisphere
21.2
2148
Female, age 91, left hemisphere
18.0
1911
Female, age 85, right hemisphere
15.5
Dentate gyrus nTPM: 24.0
2246
Female, age 85, both hemispheres
33.0
1927
Female, age 91, both hemispheres
27.1
2010
Male, age 76, both hemispheres
22.4
2530
Female, age 94, left hemisphere
22.3
2528
Male, age 74, both hemispheres
22.0
2531
Female, age 67, both hemispheres
16.8
Entorhinal gyrus nTPM: 20.7
1938
Female, age 85, left hemisphere
27.3
2613
Female, age 94, left hemisphere
21.7
2117
Female, age 91, right hemisphere
21.6
1787
Male, age 76, left hemisphere
21.1
2764
Male, age 80, right hemisphere
20.3
2686
Male, age 75, right hemisphere
12.3
Hippocampus, CA1 nTPM: 26.0
2749
Male, age 80, left hemisphere
28.8
2527
Male, age 74, both hemispheres
28.3
1873
Female, age 85, both hemispheres
27.2
2045
Male, age 76, both hemispheres
23.8
2082
Female, age 91, right hemisphere
21.9
Hippocampus, CA2 nTPM: 22.4
1892
Male, age 76, both hemispheres
33.9
2113
Female, age 91, right hemisphere
24.3
2437
Female, age 94, left hemisphere
24.3
1963
Male, age 80, left hemisphere
22.8
1940
Female, age 85, left hemisphere
18.5
2249
Male, age 74, both hemispheres
10.3
Hippocampus, CA3 nTPM: 18.4
2620
Female, age 94, left hemisphere
30.1
2436
Male, age 74, both hemispheres
20.7
2137
Male, age 80, left hemisphere
17.9
1867
Male, age 76, both hemispheres
16.9
2861
Female, age 67, both hemispheres
15.0
1891
Female, age 85, both hemispheres
10.0
Parahippocampal cortex nTPM: 20.2
2245
Female, age 91, both hemispheres
29.7
1933
Female, age 85, both hemispheres
23.2
1850
Male, age 80, both hemispheres
23.0
2692
Male, age 74, both hemispheres
22.2
2532
Female, age 72, left hemisphere
20.6
2622
Female, age 67, right hemisphere
20.1
1990
Female, age 91, right hemisphere
18.3
2018
Male, age 76, both hemispheres
16.1
2693
Female, age 94, both hemispheres
15.9
2250
Female, age 67, right hemisphere
13.1
Perirhinal gyrus nTPM: 26.6
1794
Male, age 80, right hemisphere
38.8
1847
Female, age 91, left hemisphere
29.8
2521
Female, age 94, right hemisphere
25.0
1841
Female, age 85, right hemisphere
22.8
2848
Male, age 76, right hemisphere
16.6
Subiculum nTPM: 25.8
2438
Female, age 94, left hemisphere
41.9
1901
Male, age 80, both hemispheres
33.4
2619
Male, age 74, both hemispheres
29.6
2042
Male, age 76, both hemispheres
27.4
1977
Female, age 85, both hemispheres
19.6
2729
Female, age 91, right hemisphere
3.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
36.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 36.8
Samples: 197
Max nTPM: 103.2
Min nTPM: 11.4
Std nTPM: 14.2
Median nTPM: 33.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
103.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
91.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
85.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
83.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
72.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
70.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
63.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
63.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
61.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
60.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
60.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
59.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
59.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
59.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
58.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
57.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
57.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
57.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
57.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
56.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
54.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
53.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
52.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
52.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
51.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
51.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
51.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
50.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
50.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
50.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
50.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
50.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
49.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
49.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
49.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
48.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
48.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
48.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
48.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
48.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
47.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
47.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
47.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
47.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
46.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
46.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
45.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
44.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
44.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
43.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
42.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
42.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
41.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
41.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
41.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
41.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
40.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
40.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
39.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
39.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
39.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
39.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
39.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
39.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
39.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
39.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
38.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
38.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
38.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
38.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
38.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
38.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
38.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
37.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
36.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
36.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
36.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
36.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
36.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
36.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
36.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
35.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
35.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
35.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
35.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
35.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
35.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
35.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
34.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
34.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
34.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
34.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
34.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
34.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
34.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
34.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
34.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
33.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
33.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
33.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
33.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
33.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
33.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
33.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
33.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
33.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
32.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
32.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
32.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
32.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
32.4
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
32.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
32.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
32.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
32.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
31.9
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
31.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
31.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
31.6
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
31.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
31.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
31.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
31.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
31.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
31.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
31.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
31.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
31.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
30.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
30.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
30.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
30.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
30.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
30.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
30.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
30.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
30.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
29.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
29.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
29.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
28.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
28.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
28.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
27.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
27.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
27.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
27.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
27.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
27.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
27.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
27.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
27.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
26.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
26.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
26.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
26.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
26.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
26.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
25.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
25.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
25.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
25.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
25.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
25.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
25.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
24.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
24.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
24.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
24.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
23.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
23.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
23.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
22.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
22.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
22.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
21.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
21.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
21.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
21.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
21.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
21.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
20.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
20.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
20.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
20.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
18.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
18.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
18.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
17.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
17.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
16.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
15.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
15.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
14.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
14.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
13.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
11.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.