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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
16.1
nTPM
HPA Brain:
20.1
nTPM
GTEx:
16.1
nTPM
FANTOM5:
30.7
Scaled Tags Per Million
Pig:
17.6
nTPM
Mouse:
11.1
nTPM
Allen mouse:
5.2
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA030187
Glial cells
Low
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 18.5
1855
Male, age 76, left hemisphere
24.3
2621
Female, age 67, right hemisphere
18.5
2148
Female, age 91, left hemisphere
17.3
2529
Female, age 94, left hemisphere
17.3
1898
Male, age 80, left hemisphere
16.9
1911
Female, age 85, right hemisphere
16.6
Dentate gyrus nTPM: 16.9
2010
Male, age 76, both hemispheres
20.6
2531
Female, age 67, both hemispheres
18.7
1927
Female, age 91, both hemispheres
16.6
2530
Female, age 94, left hemisphere
16.6
2246
Female, age 85, both hemispheres
14.7
2528
Male, age 74, both hemispheres
14.0
Entorhinal gyrus nTPM: 17.6
2613
Female, age 94, left hemisphere
19.7
1787
Male, age 76, left hemisphere
18.6
1938
Female, age 85, left hemisphere
17.6
2686
Male, age 75, right hemisphere
17.0
2764
Male, age 80, right hemisphere
16.7
2117
Female, age 91, right hemisphere
15.9
Hippocampus, CA1 nTPM: 19.7
2749
Male, age 80, left hemisphere
30.4
2045
Male, age 76, both hemispheres
21.7
1873
Female, age 85, both hemispheres
16.9
2527
Male, age 74, both hemispheres
15.3
2082
Female, age 91, right hemisphere
14.3
Hippocampus, CA2 nTPM: 15.9
1963
Male, age 80, left hemisphere
18.2
1892
Male, age 76, both hemispheres
17.5
2113
Female, age 91, right hemisphere
15.0
2437
Female, age 94, left hemisphere
15.0
1940
Female, age 85, left hemisphere
14.8
2249
Male, age 74, both hemispheres
14.8
Hippocampus, CA3 nTPM: 20.1
2620
Female, age 94, left hemisphere
29.2
2137
Male, age 80, left hemisphere
23.8
1867
Male, age 76, both hemispheres
20.7
2861
Female, age 67, both hemispheres
18.4
1891
Female, age 85, both hemispheres
15.0
2436
Male, age 74, both hemispheres
13.2
Parahippocampal cortex nTPM: 16.2
2018
Male, age 76, both hemispheres
19.3
2245
Female, age 91, both hemispheres
18.5
2692
Male, age 74, both hemispheres
17.2
1990
Female, age 91, right hemisphere
16.4
2622
Female, age 67, right hemisphere
16.0
1933
Female, age 85, both hemispheres
15.8
2250
Female, age 67, right hemisphere
15.7
2532
Female, age 72, left hemisphere
15.5
1850
Male, age 80, both hemispheres
15.1
2693
Female, age 94, both hemispheres
13.0
Perirhinal gyrus nTPM: 15.3
1847
Female, age 91, left hemisphere
16.8
2521
Female, age 94, right hemisphere
16.4
2848
Male, age 76, right hemisphere
16.3
1794
Male, age 80, right hemisphere
14.6
1841
Female, age 85, right hemisphere
12.4
Subiculum nTPM: 16.8
2042
Male, age 76, both hemispheres
24.2
1901
Male, age 80, both hemispheres
17.7
2619
Male, age 74, both hemispheres
17.0
2438
Female, age 94, left hemisphere
14.5
1977
Female, age 85, both hemispheres
14.4
2729
Female, age 91, right hemisphere
13.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 16.1
Samples: 197
Max nTPM: 50.0
Min nTPM: 7.8
Std nTPM: 5.1
Median nTPM: 15.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
50.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
33.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
32.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
29.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
29.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
29.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
28.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
27.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
25.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
24.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
23.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
23.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
22.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
22.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
22.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
22.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
21.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
21.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
21.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
21.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
21.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
21.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
21.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
20.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
20.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
20.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
20.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
20.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
20.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
20.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
19.9
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
19.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
19.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
19.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
19.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
19.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
19.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
19.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
19.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
19.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
19.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
19.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
19.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
19.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
19.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
18.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
18.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
18.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
18.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
18.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
18.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
18.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
18.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
18.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
18.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
18.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
18.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
18.1
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
18.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
17.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
17.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
17.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
17.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
17.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
17.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
17.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
17.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
17.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
17.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
17.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
16.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
16.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
16.9
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
16.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
16.7
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
16.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
16.4
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
16.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
16.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
16.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
16.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
16.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
16.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
16.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
16.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
16.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
16.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
16.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
15.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
15.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
15.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
15.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
15.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
15.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
15.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
15.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
15.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
15.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
15.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
15.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
15.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
15.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
15.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
15.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
15.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
14.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
14.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
14.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
14.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
14.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
14.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
14.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
14.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
14.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
14.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
14.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
14.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
14.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
14.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
14.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
14.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
14.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
14.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
13.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
13.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
13.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
13.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
13.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
13.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
13.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
13.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
13.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
13.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
13.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
13.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
13.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
13.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
13.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
13.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
13.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
13.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
13.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
13.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
12.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
12.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
12.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
12.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
12.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
12.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
12.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
12.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
12.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
12.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
12.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
12.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
12.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
12.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
12.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
12.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
12.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
12.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
12.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
12.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
11.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
11.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
11.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
11.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
11.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
11.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
11.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
11.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
11.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
11.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
11.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
11.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
11.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
11.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
11.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
11.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
10.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
10.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
10.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
10.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
10.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
10.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
10.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
10.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
10.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
10.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
10.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
9.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
9.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
8.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
8.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
8.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
7.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
7.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 10.1
Samples: 4
Max nTPM: 12.0
Min nTPM: 9.0
Sample A
Male
9.0
Sample B
Male
10.0
Sample C
Female
12.0
Sample D
Female
9.2
Hippocampal formation nTPM: 11.1
Samples: 4
Max nTPM: 12.2
Min nTPM: 10.4
Sample A
Male
10.6
Sample B
Male
10.4
Sample C
Female
12.2
Sample D
Female
11.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.