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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
REEP4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
138.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
56.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
50.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
41.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
41.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
28.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
27.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
24.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
REEP4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
97.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
513
Tumor
1.0
1013
Tumor
0.9
211
Tumor
0.9
851
Tumor
0.9
724
Normal
0.8
615
Tumor
0.8
635
Tumor
0.8
1027
Tumor
0.8
123
Tumor
0.8
685
Tumor
0.8
412
Normal
0.7
665
Tumor
0.7
313
Tumor
0.7
493
Tumor
0.7
741
Tumor
0.7
977
Tumor
0.6
491
Tumor
0.6
257
Tumor
0.6
351
Tumor
0.6
435
Tumor
0.6
865
Tumor
0.6
363
Tumor
0.6
627
Tumor
0.6
535
Tumor
0.5
745
Tumor
0.5
283
Tumor
0.5
465
Tumor
0.5
411
Tumor
0.5
917
Tumor
0.5
727
Tumor
0.5
383
Tumor
0.5
395
Tumor
0.4
663
Tumor
0.4
737
Tumor
0.4
852
Normal
0.4
1015
Tumor
0.4
267
Tumor
0.4
125
Tumor
0.4
136
Normal
0.4
328
Normal
0.4
755
Tumor
0.4
451
Tumor
0.4
113
Tumor
0.4
857
Tumor
0.4
861
Tumor
0.4
391
Tumor
0.4
915
Tumor
0.3
824
Normal
0.3
137
Tumor
0.3
937
Tumor
0.3
393
Tumor
0.3
944
Normal
0.3
951
Tumor
0.3
868
Normal
0.3
268
Normal
0.3
978
Normal
0.3
456
Normal
0.3
358
Normal
0.3
464
Normal
0.3
911
Tumor
0.3
958
Normal
0.3
943
Tumor
0.3
497
Tumor
0.3
815
Tumor
0.3
138
Normal
0.3
957
Tumor
0.3
955
Tumor
0.3
357
Tumor
0.3
147
Tumor
0.3
661
Tumor
0.3
816
Normal
0.3
171
Tumor
0.3
452
Normal
0.3
756
Normal
0.3
938
Normal
0.3
191
Tumor
0.3
966
Normal
0.3
1022
Normal
0.3
466
Normal
0.3
445
Tumor
0.2
365
Tumor
0.2
468
Normal
0.2
364
Normal
0.2
527
Tumor
0.2
312
Normal
0.2
1045
Tumor
0.2
863
Tumor
0.2
353
Tumor
0.2
385
Tumor
0.2
142
Normal
0.2
925
Tumor
0.2
415
Tumor
0.2
916
Normal
0.2
354
Normal
0.2
481
Tumor
0.2
311
Tumor
0.2
423
Tumor
0.2
786
Normal
0.2
952
Normal
0.2
918
Normal
0.2
956
Normal
0.2
332
Normal
0.2
723
Tumor
0.2
213
Tumor
0.2
537
Tumor
0.2
427
Tumor
0.2
141
Tumor
0.2
1042
Normal
0.2
785
Tumor
0.2
1014
Normal
0.2
873
Tumor
0.2
112
Tumor
0.2
528
Normal
0.1
352
Normal
0.1
882
Normal
0.1
262
Normal
0.1
1032
Normal
0.1
434
Normal
0.1
954
Normal
0.1
926
Normal
0.1
284
Normal
0.1
647
Tumor
0.1
314
Normal
0.1
472
Normal
0.1
277
Tumor
0.1
422
Normal
0.1
983
Tumor
0.1
196
Normal
0.1
743
Tumor
0.1
1041
Tumor
0.1
187
Tumor
0.1
662
Normal
0.1
331
Tumor
0.1
742
Normal
0.1
814
Normal
0.1
922
Normal
0.1
777
Tumor
0.1
884
Normal
0.1
447
Tumor
0.1
1043
Tumor
0.1
222
Normal
0.1
867
Tumor
0.1
356
Normal
0.1
666
Normal
0.1
568
Normal
0.1
484
Normal
0.1
567
Tumor
0.1
874
Normal
0.1
132
Normal
0.1
231
Tumor
0.1
738
Normal
0.1
483
Tumor
0.1
416
Normal
0.1
858
Normal
0.1
111
Normal
0.1
912
Normal
0.1
746
Normal
0.1
984
Normal
0.1
534
Normal
0.1
817
Tumor
0.1
818
Normal
0.1
127
Tumor
0.1
436
Normal
0.1
327
Tumor
0.1
536
Normal
0.1
258
Normal
0.0
914
Normal
0.0
1028
Normal
0.0
212
Normal
0.0
616
Normal
0.0
161
Tumor
0.0
455
Tumor
0.0
446
Normal
0.0
968
Normal
0.0
698
Normal
0.0
628
Normal
0.0
1046
Normal
0.0
387
Tumor
0.0
463
Tumor
0.0
1016
Normal
0.0
982
Normal
0.0
146
Normal
0.0
217
Tumor
0.0
866
Normal
0.0
342
Normal
0.0
195
Tumor
0.0
862
Normal
0.0
298
Normal
0.0
432
Normal
0.0
728
Normal
0.0
285
Tumor
0.0
492
Normal
0.0
564
Normal
0.0
477
Tumor
0.0
574
Normal
0.0
553
Tumor
0.0
172
Normal
0.0
488
Normal
0.0
145
Tumor
0.0
636
Normal
0.0
396
Normal
0.0
223
Tumor
0.0
558
Normal
0.0
648
Normal
0.0
1044
Normal
0.0
278
Normal
0.0
375
Tumor
0.0
641
Tumor
0.0
473
Tumor
0.0
716
Normal
0.0
467
Tumor
0.0
1026
Normal
0.0
384
Normal
0.0
355
Tumor
0.0
572
Normal
0.0
498
Normal
0.0
964
Normal
0.0
388
Normal
-0.1
813
Tumor
-0.1
494
Normal
-0.1
546
Normal
-0.1
392
Normal
-0.1
124
Normal
-0.1
218
Normal
-0.1
963
Tumor
-0.1
426
Normal
-0.1
618
Normal
-0.1
214
Normal
-0.1
232
Normal
-0.1
642
Normal
-0.1
981
Tumor
-0.1
366
Normal
-0.1
554
Normal
-0.1
664
Normal
-0.1
126
Normal
-0.1
617
Tumor
-0.1
864
Normal
-0.1
478
Normal
-0.1
341
Tumor
-0.1
186
Normal
-0.1
188
Normal
-0.1
431
Tumor
-0.1
272
Normal
-0.1
778
Normal
-0.1
286
Normal
-0.1
444
Normal
-0.1
261
Tumor
-0.1
368
Normal
-0.1
135
Tumor
-0.1
878
Normal
-0.1
881
Tumor
-0.1
924
Normal
-0.1
114
Normal
-0.1
362
Normal
-0.1
524
Normal
-0.1
697
Tumor
-0.1
671
Tumor
-0.1
227
Tumor
-0.1
714
Normal
-0.1
913
Tumor
-0.1
148
Normal
-0.2
425
Tumor
-0.2
386
Normal
-0.2
1021
Tumor
-0.2
482
Normal
-0.2
224
Normal
-0.2
433
Tumor
-0.2
573
Tumor
-0.2
448
Normal
-0.2
413
Tumor
-0.2
823
Tumor
-0.2
394
Normal
-0.2
696
Normal
-0.2
474
Normal
-0.2
424
Normal
-0.2
953
Tumor
-0.2
538
Normal
-0.2
128
Normal
-0.2
344
Normal
-0.2
721
Tumor
-0.2
471
Tumor
-0.2
976
Normal
-0.2
297
Tumor
-0.2
672
Normal
-0.2
526
Normal
-0.2
376
Normal
-0.2
228
Normal
-0.2
428
Normal
-0.2
361
Tumor
-0.2
162
Normal
-0.2
563
Tumor
-0.2
557
Tumor
-0.2
343
Tumor
-0.2
967
Tumor
-0.3
744
Normal
-0.3
421
Tumor
-0.3
686
Normal
-0.3
462
Normal
-0.3
414
Normal
-0.3
192
Normal
-0.3
545
Tumor
-0.3
514
Normal
-0.3
131
Tumor
-0.3
518
Normal
-0.3
722
Normal
-0.3
516
Normal
-0.3
185
Tumor
-0.3
487
Tumor
-0.3
965
Tumor
-0.3
713
Tumor
-0.3
923
Tumor
-0.3
1031
Tumor
-0.3
1025
Tumor
-0.4
715
Tumor
-0.4
525
Tumor
-0.4
883
Tumor
-0.4
221
Tumor
-0.4
921
Tumor
-0.4
975
Tumor
-0.5
571
Tumor
-0.5
877
Tumor
-0.5
533
Tumor
-0.5
515
Tumor
-0.5
461
Tumor
-0.5
517
Tumor
-0.5
367
Tumor
-0.6
271
Tumor
-0.6
523
Tumor
-0.7
443
Tumor
-0.7
695
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
