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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
55.4
nTPM
HPA Brain:
51.8
nTPM
GTEx:
55.4
nTPM
FANTOM5:
90.1
Scaled Tags Per Million
Pig:
38.9
nTPM
Mouse:
54.1
nTPM
Allen mouse:
0.3
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA019717
Glial cells
Not detected
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
51.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 51.8
1855
Male, age 76, left hemisphere
57.2
1898
Male, age 80, left hemisphere
56.7
2148
Female, age 91, left hemisphere
53.5
1911
Female, age 85, right hemisphere
50.6
2529
Female, age 94, left hemisphere
49.6
2621
Female, age 67, right hemisphere
43.3
Dentate gyrus nTPM: 42.0
2246
Female, age 85, both hemispheres
49.6
2010
Male, age 76, both hemispheres
47.9
2528
Male, age 74, both hemispheres
44.1
1927
Female, age 91, both hemispheres
41.9
2530
Female, age 94, left hemisphere
40.7
2531
Female, age 67, both hemispheres
27.6
Entorhinal gyrus nTPM: 45.5
2117
Female, age 91, right hemisphere
66.7
1938
Female, age 85, left hemisphere
52.0
2686
Male, age 75, right hemisphere
44.7
1787
Male, age 76, left hemisphere
43.5
2764
Male, age 80, right hemisphere
33.5
2613
Female, age 94, left hemisphere
32.8
Hippocampus, CA1 nTPM: 46.1
2527
Male, age 74, both hemispheres
54.7
1873
Female, age 85, both hemispheres
49.8
2082
Female, age 91, right hemisphere
48.3
2045
Male, age 76, both hemispheres
39.7
2749
Male, age 80, left hemisphere
38.0
Hippocampus, CA2 nTPM: 49.4
1940
Female, age 85, left hemisphere
56.4
2113
Female, age 91, right hemisphere
54.6
1892
Male, age 76, both hemispheres
49.5
1963
Male, age 80, left hemisphere
45.9
2249
Male, age 74, both hemispheres
45.3
2437
Female, age 94, left hemisphere
44.5
Hippocampus, CA3 nTPM: 38.3
1867
Male, age 76, both hemispheres
48.9
1891
Female, age 85, both hemispheres
45.1
2436
Male, age 74, both hemispheres
41.2
2861
Female, age 67, both hemispheres
39.0
2137
Male, age 80, left hemisphere
31.5
2620
Female, age 94, left hemisphere
24.1
Parahippocampal cortex nTPM: 50.1
2250
Female, age 67, right hemisphere
64.5
2692
Male, age 74, both hemispheres
63.1
2622
Female, age 67, right hemisphere
57.5
1933
Female, age 85, both hemispheres
52.6
2018
Male, age 76, both hemispheres
49.3
2693
Female, age 94, both hemispheres
45.5
1850
Male, age 80, both hemispheres
44.8
1990
Female, age 91, right hemisphere
44.8
2245
Female, age 91, both hemispheres
44.8
2532
Female, age 72, left hemisphere
34.2
Perirhinal gyrus nTPM: 42.5
1847
Female, age 91, left hemisphere
47.7
1841
Female, age 85, right hemisphere
45.2
1794
Male, age 80, right hemisphere
43.5
2521
Female, age 94, right hemisphere
40.3
2848
Male, age 76, right hemisphere
35.7
Subiculum nTPM: 49.0
2729
Female, age 91, right hemisphere
65.4
2619
Male, age 74, both hemispheres
54.5
2042
Male, age 76, both hemispheres
52.9
2438
Female, age 94, left hemisphere
44.8
1977
Female, age 85, both hemispheres
40.6
1901
Male, age 80, both hemispheres
36.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
55.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 55.4
Samples: 197
Max nTPM: 121.0
Min nTPM: 18.6
Std nTPM: 19.8
Median nTPM: 52.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
121.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
112.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
111.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
109.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
106.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
103.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
101.8
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
101.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
96.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
96.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
94.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
94.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
91.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
90.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
90.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
87.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
87.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
86.2
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
84.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
81.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
80.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
80.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
79.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
78.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
78.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
77.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
76.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
73.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
73.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
73.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
73.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
72.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
72.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
72.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
71.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
70.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
70.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
70.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
70.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
70.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
70.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
69.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
69.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
68.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
68.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
68.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
68.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
67.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
66.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
66.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
65.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
65.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
64.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
64.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
64.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
64.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
64.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
63.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
63.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
63.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
62.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
61.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
61.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
61.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
61.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
60.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
60.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
60.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
60.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
59.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
59.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
59.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
59.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
59.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
59.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
59.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
59.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
58.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
58.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
58.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
58.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
57.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
57.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
57.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
57.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
56.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
55.8
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
55.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
55.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
55.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
54.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
54.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
54.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
54.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
54.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
53.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
53.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
53.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
52.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
52.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
52.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
51.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
51.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
51.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
51.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
51.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
49.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
49.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
48.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
48.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
48.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
48.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
47.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
47.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
47.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
46.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
46.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
46.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
46.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
46.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
45.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
45.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
45.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
45.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
45.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
45.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
44.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
44.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
44.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
44.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
44.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
43.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
43.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
43.9
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
43.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
43.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
43.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
43.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
43.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
42.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
42.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
41.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
41.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
41.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
41.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
41.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
41.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
41.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
40.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
40.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
40.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
39.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
39.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
39.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
39.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
39.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
38.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
38.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
38.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
38.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
38.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
38.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
37.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
37.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
36.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
36.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
36.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
36.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
36.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
35.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
35.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
35.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
35.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
34.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
33.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
33.1
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
33.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
33.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
32.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
32.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
31.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
31.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
31.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
31.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
31.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
30.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
30.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
29.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
28.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
27.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
26.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
25.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
24.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
24.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
23.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
23.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
18.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 49.9
Samples: 4
Max nTPM: 57.5
Min nTPM: 40.7
Sample A
Male
57.5
Sample B
Male
52.1
Sample C
Female
49.3
Sample D
Female
40.7
Hippocampal formation nTPM: 54.1
Samples: 4
Max nTPM: 58.3
Min nTPM: 50.0
Sample A
Male
56.7
Sample B
Male
50.0
Sample C
Female
58.3
Sample D
Female
51.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.