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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
707.2
nTPM
HPA Brain:
728.9
nTPM
GTEx:
707.2
nTPM
FANTOM5:
754.1
Scaled Tags Per Million
Mouse:
139.7
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
728.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 454.8
2828
Female, age 72, unknown
1120.4
1870
Female, age 42, unknown
588.6
2586
Male, age 75, left hemisphere
553.0
1827
Male, age 72, unknown
531.3
2666
Male, age 74, left hemisphere
451.0
1830
Male, age 51, unknown
327.6
1833
Male, age 53, unknown
282.6
2019
Male, age 18, unknown
263.6
2411
Female, age 72, unknown
240.6
2219
Male, age 76, both hemispheres
189.0
Dorsal raphe nucleus nTPM: 418.6
2016
Female, age 72, unknown
747.5
1828
Male, age 53, unknown
471.9
2047
Male, age 72, unknown
323.1
2750
Male, age 76, both hemispheres
290.2
2298
Female, age 72, unknown
260.5
Inferior colliculus nTPM: 339.8
1848
Female, age 42, unknown
488.9
2849
Male, age 72, unknown
424.4
1890
Male, age 53, unknown
229.9
2097
Female, age 72, unknown
215.7
Median raphe nucleus nTPM: 366.3
2220
Male, age 76, midline
366.3
Periaquaductal grey, anterior nTPM: 483.6
1795
Male, age 51, unknown
628.9
2502
Female, age 75, unknown
531.6
1947
Male, age 18, unknown
290.3
Periaquaductal grey, dorsal nTPM: 549.3
1831
Male, age 72, unknown
847.2
2850
Male, age 76, both hemispheres
620.3
1840
Male, age 53, unknown
479.3
2464
Female, age 72, unknown
250.5
Periaquaductal grey, lateral nTPM: 728.6
2053
Male, age 18, unknown
1026.3
2272
Male, age 74, both hemispheres
582.4
2140
Male, age 76, both hemispheres
577.0
Pretectal area nTPM: 625.5
2407
Male, age 75, both hemispheres
1007.0
2316
Male, age 76, right hemisphere
976.2
2273
Male, age 74, both hemispheres
714.8
2825
Male, age 18, unknown
667.9
2224
Female, age 72, unknown
639.8
1815
Male, age 53, unknown
585.5
1816
Male, age 51, unknown
563.9
2667
Female, age 75, unknown
559.2
1944
Female, age 72, unknown
548.4
1817
Female, age 42, unknown
372.5
2007
Male, age 72, unknown
245.5
Red nucleus nTPM: 363.8
2503
Female, age 72, unknown
541.5
2725
Female, age 75, unknown
468.3
2823
Male, age 76, right hemisphere
432.2
2769
Male, age 72, unknown
375.6
2588
Male, age 74, left hemisphere
364.8
2227
Male, age 72, unknown
362.5
2584
Male, age 75, left hemisphere
342.8
1865
Male, age 51, unknown
332.8
2785
Male, age 18, unknown
315.6
1821
Female, age 72, unknown
308.1
1904
Male, age 53, unknown
303.8
1954
Female, age 42, unknown
217.8
Substantia nigra nTPM: 569.6
2699
Male, age 18, unknown
1073.0
1851
Male, age 51, unknown
773.1
2590
Female, age 75, unknown
599.3
2583
Male, age 75, right hemisphere
576.0
2409
Female, age 72, unknown
561.3
2665
Male, age 74, both hemispheres
522.9
1916
Female, age 42, unknown
482.0
1941
Male, age 53, unknown
441.0
1889
Female, age 72, unknown
350.4
2241
Male, age 72, unknown
317.3
Superior colliculus nTPM: 728.9
1913
Female, age 42, unknown
1128.1
2664
Male, age 75, both hemispheres
1116.9
1995
Male, age 72, unknown
991.1
1796
Male, age 53, unknown
931.2
2087
Female, age 72, unknown
704.1
2587
Male, age 74, left hemisphere
610.5
1839
Male, age 51, unknown
575.5
2261
Male, age 18, unknown
537.2
2668
Female, age 75, unknown
411.7
1895
Male, age 76, right hemisphere
283.0
Ventral tegmental area nTPM: 597.1
2021
Male, age 53, unknown
959.8
1915
Female, age 42, unknown
813.4
2223
Female, age 72, unknown
527.7
1942
Male, age 51, unknown
446.6
2218
Male, age 76, both hemispheres
419.6
2410
Female, age 72, unknown
415.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
707.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 707.2
Samples: 139
Max nTPM: 2762.4
Min nTPM: 100.8
Std nTPM: 454.8
Median nTPM: 601.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2762.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2180.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
2141.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1975.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1595.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1580.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1556.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1553.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1547.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1442.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1414.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1410.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1407.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1377.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1352.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1329.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1324.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1304.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1252.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1215.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
1202.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1180.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1153.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1106.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1080.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1061.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1043.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1039.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1014.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1005.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
977.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
934.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
933.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
919.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
917.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
904.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
894.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
862.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
853.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
827.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
816.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
791.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
790.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
789.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
784.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
760.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
754.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
747.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
738.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
730.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
722.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
689.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
688.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
687.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
682.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
676.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
661.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
654.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
632.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
631.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
628.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
626.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
626.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
624.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
620.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
610.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
609.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
608.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
607.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
601.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
591.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
563.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
559.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
554.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
546.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
533.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
519.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
514.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
496.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
491.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
490.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
480.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
479.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
466.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
464.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
464.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
460.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
458.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
455.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
451.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
450.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
449.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
443.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
440.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
436.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
431.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
430.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
430.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
427.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
422.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
420.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
419.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
413.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
403.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
401.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
399.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
395.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
391.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
387.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
373.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
373.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
360.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
344.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
341.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
334.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
330.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
328.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
324.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
318.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
311.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
307.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
305.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
291.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
290.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
274.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
245.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
242.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
236.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
236.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
224.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
216.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
209.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
208.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
204.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
195.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
179.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
174.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
155.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
100.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
139.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 139.7
Samples: 4
Max nTPM: 172.8
Min nTPM: 109.4
Sample A
Male
132.0
Sample B
Male
109.4
Sample C
Female
172.8
Sample D
Female
144.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.