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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
823.5
nTPM
HPA Brain:
934.6
nTPM
GTEx:
823.5
nTPM
FANTOM5:
1278.6
Scaled Tags Per Million
Mouse:
341.2
nTPM
Allen mouse:
0.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA055888
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
934.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 934.6
2529
Female, age 94, left hemisphere
1074.9
1898
Male, age 80, left hemisphere
994.3
1911
Female, age 85, right hemisphere
967.0
1855
Male, age 76, left hemisphere
907.7
2148
Female, age 91, left hemisphere
842.5
2621
Female, age 67, right hemisphere
821.5
Dentate gyrus nTPM: 796.9
2530
Female, age 94, left hemisphere
976.1
2246
Female, age 85, both hemispheres
874.6
2528
Male, age 74, both hemispheres
868.5
2010
Male, age 76, both hemispheres
790.0
2531
Female, age 67, both hemispheres
699.7
1927
Female, age 91, both hemispheres
572.5
Entorhinal gyrus nTPM: 857.9
2117
Female, age 91, right hemisphere
1084.4
2686
Male, age 75, right hemisphere
1076.1
1787
Male, age 76, left hemisphere
882.7
1938
Female, age 85, left hemisphere
830.3
2764
Male, age 80, right hemisphere
677.9
2613
Female, age 94, left hemisphere
596.0
Hippocampus, CA1 nTPM: 742.9
1873
Female, age 85, both hemispheres
900.1
2527
Male, age 74, both hemispheres
804.3
2082
Female, age 91, right hemisphere
727.7
2749
Male, age 80, left hemisphere
720.0
2045
Male, age 76, both hemispheres
562.6
Hippocampus, CA2 nTPM: 804.9
1940
Female, age 85, left hemisphere
1045.7
2437
Female, age 94, left hemisphere
874.4
2113
Female, age 91, right hemisphere
857.8
1963
Male, age 80, left hemisphere
805.4
2249
Male, age 74, both hemispheres
714.4
1892
Male, age 76, both hemispheres
531.3
Hippocampus, CA3 nTPM: 745.6
2861
Female, age 67, both hemispheres
904.5
1891
Female, age 85, both hemispheres
857.1
2620
Female, age 94, left hemisphere
769.4
2137
Male, age 80, left hemisphere
694.0
1867
Male, age 76, both hemispheres
646.0
2436
Male, age 74, both hemispheres
602.4
Parahippocampal cortex nTPM: 782.7
2622
Female, age 67, right hemisphere
1030.3
2692
Male, age 74, both hemispheres
985.8
2245
Female, age 91, both hemispheres
843.1
1933
Female, age 85, both hemispheres
804.7
2250
Female, age 67, right hemisphere
793.9
2018
Male, age 76, both hemispheres
733.6
1990
Female, age 91, right hemisphere
715.6
2532
Female, age 72, left hemisphere
675.8
1850
Male, age 80, both hemispheres
663.1
2693
Female, age 94, both hemispheres
581.2
Perirhinal gyrus nTPM: 642.5
1841
Female, age 85, right hemisphere
730.2
1847
Female, age 91, left hemisphere
699.3
1794
Male, age 80, right hemisphere
637.9
2848
Male, age 76, right hemisphere
628.5
2521
Female, age 94, right hemisphere
516.6
Subiculum nTPM: 869.7
2619
Male, age 74, both hemispheres
1038.1
2042
Male, age 76, both hemispheres
976.6
2729
Female, age 91, right hemisphere
953.6
2438
Female, age 94, left hemisphere
808.9
1901
Male, age 80, both hemispheres
761.9
1977
Female, age 85, both hemispheres
679.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
823.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 823.5
Samples: 197
Max nTPM: 2251.7
Min nTPM: 264.6
Std nTPM: 320.8
Median nTPM: 778.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
2251.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
2134.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
2061.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
1551.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
1520.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
1493.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
1481.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
1459.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
1457.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
1447.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
1403.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
1356.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
1355.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
1351.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
1334.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
1324.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1286.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
1280.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
1252.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
1244.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
1231.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
1226.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
1224.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
1217.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
1205.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
1199.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
1140.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
1092.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
1090.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
1084.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
1074.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
1060.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
1057.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
1051.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
1050.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
1046.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
1045.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
1044.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
1044.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
1042.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
1037.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
1037.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
1032.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
1017.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
1016.4
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
1005.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
986.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
981.8
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
978.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
973.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
970.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
966.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
965.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
951.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
950.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
943.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
938.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
936.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
933.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
926.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
923.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
922.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
920.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
916.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
914.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
912.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
896.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
894.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
890.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
883.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
879.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
878.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
872.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
866.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
866.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
858.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
855.6
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
853.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
847.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
846.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
846.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
845.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
845.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
840.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
835.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
834.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
832.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
819.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
817.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
809.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
806.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
795.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
793.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
790.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
788.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
787.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
785.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
785.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
778.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
778.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
777.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
777.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
772.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
765.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
764.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
759.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
756.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
752.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
749.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
745.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
745.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
741.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
732.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
731.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
728.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
721.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
716.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
714.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
711.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
707.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
706.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
700.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
692.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
686.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
682.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
680.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
677.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
669.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
664.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
663.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
651.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
648.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
647.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
646.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
637.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
632.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
622.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
618.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
616.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
611.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
610.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
606.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
605.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
599.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
596.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
595.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
586.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
580.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
579.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
577.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
576.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
574.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
571.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
567.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
565.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
560.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
545.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
542.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
541.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
539.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
538.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
532.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
529.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
528.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
525.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
525.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
521.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
518.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
517.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
511.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
501.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
499.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
498.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
495.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
492.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
489.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
477.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
476.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
473.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
466.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
463.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
460.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
454.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
452.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
444.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
439.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
428.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
427.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
425.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
403.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
397.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
389.9
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
386.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
334.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
333.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
315.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
264.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
341.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 341.2
Samples: 4
Max nTPM: 421.3
Min nTPM: 283.8
Sample A
Male
359.0
Sample B
Male
300.7
Sample C
Female
421.3
Sample D
Female
283.8
Hippocampal formation nTPM: 291.2
Samples: 4
Max nTPM: 326.6
Min nTPM: 231.1
Sample A
Male
300.3
Sample B
Male
231.1
Sample C
Female
306.6
Sample D
Female
326.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.