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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
30.6
nTPM
HPA Brain:
16.1
nTPM
GTEx:
30.6
nTPM
FANTOM5:
23.6
Scaled Tags Per Million
Pig:
7.4
nTPM
Mouse:
21.6
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 11.5
2019
Male, age 18, unknown
14.2
1827
Male, age 72, unknown
13.9
2219
Male, age 76, both hemispheres
13.2
2828
Female, age 72, unknown
12.9
1870
Female, age 42, unknown
12.8
2411
Female, age 72, unknown
11.4
1833
Male, age 53, unknown
10.4
1830
Male, age 51, unknown
9.8
2666
Male, age 74, left hemisphere
8.8
2586
Male, age 75, left hemisphere
7.4
Dorsal raphe nucleus nTPM: 12.6
2298
Female, age 72, unknown
15.5
2750
Male, age 76, both hemispheres
14.5
1828
Male, age 53, unknown
13.0
2047
Male, age 72, unknown
10.3
2016
Female, age 72, unknown
10.0
Inferior colliculus nTPM: 12.2
2097
Female, age 72, unknown
15.6
1890
Male, age 53, unknown
12.2
1848
Female, age 42, unknown
11.6
2849
Male, age 72, unknown
9.6
Median raphe nucleus nTPM: 13.0
2220
Male, age 76, midline
13.0
Periaquaductal grey, anterior nTPM: 12.6
1947
Male, age 18, unknown
13.1
1795
Male, age 51, unknown
12.7
2502
Female, age 75, unknown
11.9
Periaquaductal grey, dorsal nTPM: 10.8
1840
Male, age 53, unknown
13.1
2850
Male, age 76, both hemispheres
10.5
1831
Male, age 72, unknown
10.3
2464
Female, age 72, unknown
9.4
Periaquaductal grey, lateral nTPM: 10.9
2272
Male, age 74, both hemispheres
11.6
2053
Male, age 18, unknown
10.8
2140
Male, age 76, both hemispheres
10.2
Pretectal area nTPM: 13.7
2007
Male, age 72, unknown
17.6
1816
Male, age 51, unknown
16.6
1944
Female, age 72, unknown
15.7
1817
Female, age 42, unknown
15.3
1815
Male, age 53, unknown
14.3
2273
Male, age 74, both hemispheres
13.1
2667
Female, age 75, unknown
13.0
2224
Female, age 72, unknown
12.3
2316
Male, age 76, right hemisphere
12.2
2407
Male, age 75, both hemispheres
10.6
2825
Male, age 18, unknown
10.3
Red nucleus nTPM: 11.3
1821
Female, age 72, unknown
15.2
2823
Male, age 76, right hemisphere
13.0
2785
Male, age 18, unknown
12.4
2503
Female, age 72, unknown
12.2
2725
Female, age 75, unknown
11.8
1954
Female, age 42, unknown
11.6
1904
Male, age 53, unknown
10.9
2227
Male, age 72, unknown
10.8
1865
Male, age 51, unknown
10.7
2769
Male, age 72, unknown
10.4
2584
Male, age 75, left hemisphere
9.3
2588
Male, age 74, left hemisphere
7.7
Substantia nigra nTPM: 16.1
1916
Female, age 42, unknown
27.8
2241
Male, age 72, unknown
21.2
1851
Male, age 51, unknown
19.5
1889
Female, age 72, unknown
16.6
1941
Male, age 53, unknown
15.9
2409
Female, age 72, unknown
15.1
2699
Male, age 18, unknown
12.8
2590
Female, age 75, unknown
12.7
2583
Male, age 75, right hemisphere
11.1
2665
Male, age 74, both hemispheres
8.8
Superior colliculus nTPM: 11.9
2668
Female, age 75, unknown
14.9
2087
Female, age 72, unknown
13.8
1796
Male, age 53, unknown
13.5
1895
Male, age 76, right hemisphere
13.5
2587
Male, age 74, left hemisphere
13.0
2261
Male, age 18, unknown
12.9
1913
Female, age 42, unknown
10.4
1839
Male, age 51, unknown
9.4
1995
Male, age 72, unknown
9.2
2664
Male, age 75, both hemispheres
8.6
Ventral tegmental area nTPM: 14.1
2218
Male, age 76, both hemispheres
18.1
1915
Female, age 42, unknown
17.1
2410
Female, age 72, unknown
14.1
1942
Male, age 51, unknown
13.1
2223
Female, age 72, unknown
12.8
2021
Male, age 53, unknown
9.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 30.6
Samples: 139
Max nTPM: 66.2
Min nTPM: 16.1
Std nTPM: 8.4
Median nTPM: 29.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
66.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
57.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
56.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
49.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
47.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
46.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
45.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
45.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
45.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
44.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
43.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
43.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
42.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
42.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
41.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
41.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
40.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
40.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
39.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
39.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
39.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
39.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
38.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
38.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
37.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
36.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
36.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
35.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
35.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
35.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
35.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
35.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
35.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
35.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
34.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
34.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
34.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
34.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
34.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
34.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
33.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
33.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
33.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
33.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
33.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
33.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
32.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
32.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
32.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
32.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
32.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
32.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
32.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
31.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
31.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
31.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
31.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
31.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
31.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
31.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
31.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
31.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
30.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
30.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
30.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
30.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
30.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
29.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
29.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
29.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
29.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
29.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
29.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
29.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
28.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
28.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
27.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
27.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
27.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
27.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
27.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
27.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
27.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
27.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
27.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
27.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
26.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
26.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
26.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
26.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
26.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
26.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
26.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
26.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
26.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
26.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
26.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
26.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
25.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
25.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
25.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
25.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
25.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
24.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
24.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
24.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
24.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
23.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
23.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
23.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
23.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
23.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
23.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
23.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
23.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
22.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
22.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
22.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
22.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
22.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
22.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
21.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
21.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
21.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
21.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
21.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
20.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
20.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
20.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
19.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
19.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
19.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
19.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
18.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
18.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
18.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
17.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
17.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
16.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 21.6
Samples: 4
Max nTPM: 26.5
Min nTPM: 18.7
Sample A
Male
22.2
Sample B
Male
18.8
Sample C
Female
26.5
Sample D
Female
18.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.