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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
46.0
nTPM
HPA Brain:
144.6
nTPM
GTEx:
46.0
nTPM
FANTOM5:
19.9
Scaled Tags Per Million
Pig:
42.4
nTPM
Mouse:
6.9
nTPM
Allen mouse:
0.7
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
144.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 94.2
2586
Male, age 75, left hemisphere
263.8
2828
Female, age 72, unknown
133.0
1827
Male, age 72, unknown
90.0
1833
Male, age 53, unknown
81.2
1870
Female, age 42, unknown
75.6
2411
Female, age 72, unknown
68.4
1830
Male, age 51, unknown
67.7
2666
Male, age 74, left hemisphere
58.5
2019
Male, age 18, unknown
53.9
2219
Male, age 76, both hemispheres
49.7
Dorsal raphe nucleus nTPM: 119.1
2047
Male, age 72, unknown
159.4
2016
Female, age 72, unknown
128.9
1828
Male, age 53, unknown
111.3
2298
Female, age 72, unknown
109.0
2750
Male, age 76, both hemispheres
87.0
Inferior colliculus nTPM: 112.3
2849
Male, age 72, unknown
136.7
1848
Female, age 42, unknown
132.4
1890
Male, age 53, unknown
93.3
2097
Female, age 72, unknown
86.8
Median raphe nucleus nTPM: 107.8
2220
Male, age 76, midline
107.8
Periaquaductal grey, anterior nTPM: 127.2
2502
Female, age 75, unknown
149.4
1795
Male, age 51, unknown
128.3
1947
Male, age 18, unknown
103.9
Periaquaductal grey, dorsal nTPM: 133.8
1840
Male, age 53, unknown
169.9
2850
Male, age 76, both hemispheres
157.3
2464
Female, age 72, unknown
111.3
1831
Male, age 72, unknown
96.7
Periaquaductal grey, lateral nTPM: 144.6
2140
Male, age 76, both hemispheres
181.9
2053
Male, age 18, unknown
153.6
2272
Male, age 74, both hemispheres
98.4
Pretectal area nTPM: 96.8
2273
Male, age 74, both hemispheres
130.4
2825
Male, age 18, unknown
123.4
2407
Male, age 75, both hemispheres
116.8
2667
Female, age 75, unknown
106.7
1817
Female, age 42, unknown
99.1
1944
Female, age 72, unknown
95.9
1816
Male, age 51, unknown
92.3
2316
Male, age 76, right hemisphere
89.2
1815
Male, age 53, unknown
79.7
2224
Female, age 72, unknown
70.2
2007
Male, age 72, unknown
61.5
Red nucleus nTPM: 77.2
2584
Male, age 75, left hemisphere
109.9
1954
Female, age 42, unknown
88.5
2769
Male, age 72, unknown
87.9
2227
Male, age 72, unknown
86.5
1904
Male, age 53, unknown
76.3
1865
Male, age 51, unknown
74.6
1821
Female, age 72, unknown
72.1
2823
Male, age 76, right hemisphere
71.9
2725
Female, age 75, unknown
69.8
2588
Male, age 74, left hemisphere
68.1
2503
Female, age 72, unknown
65.5
2785
Male, age 18, unknown
55.4
Substantia nigra nTPM: 88.7
2699
Male, age 18, unknown
130.1
2583
Male, age 75, right hemisphere
120.6
1916
Female, age 42, unknown
101.6
2665
Male, age 74, both hemispheres
88.7
1941
Male, age 53, unknown
87.2
1851
Male, age 51, unknown
79.8
1889
Female, age 72, unknown
76.6
2590
Female, age 75, unknown
73.6
2241
Male, age 72, unknown
72.9
2409
Female, age 72, unknown
55.8
Superior colliculus nTPM: 97.0
2664
Male, age 75, both hemispheres
176.7
2261
Male, age 18, unknown
109.2
1796
Male, age 53, unknown
100.6
2087
Female, age 72, unknown
99.3
1995
Male, age 72, unknown
93.4
2668
Female, age 75, unknown
88.7
1839
Male, age 51, unknown
88.1
1913
Female, age 42, unknown
79.9
2587
Male, age 74, left hemisphere
79.4
1895
Male, age 76, right hemisphere
55.1
Ventral tegmental area nTPM: 93.2
1942
Male, age 51, unknown
129.8
1915
Female, age 42, unknown
98.6
2021
Male, age 53, unknown
94.9
2223
Female, age 72, unknown
89.0
2218
Male, age 76, both hemispheres
84.1
2410
Female, age 72, unknown
63.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 46.0
Samples: 139
Max nTPM: 198.0
Min nTPM: 5.2
Std nTPM: 28.2
Median nTPM: 36.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
198.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
137.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
133.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
124.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
110.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
109.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
98.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
96.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
96.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
96.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
93.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
88.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
88.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
84.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
80.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
75.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
73.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
72.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
70.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
69.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
69.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
67.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
66.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
64.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
64.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
63.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
63.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
63.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
61.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
61.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
59.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
58.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
58.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
57.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
57.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
55.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
53.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
53.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
53.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
52.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
52.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
52.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
52.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
52.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
51.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
51.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
51.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
51.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
51.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
50.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
49.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
48.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
47.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
46.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
46.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
45.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
45.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
44.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
43.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
43.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
41.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
40.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
40.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
40.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
39.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
39.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
39.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
38.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
38.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
36.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
36.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
36.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
36.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
35.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
35.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
35.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
34.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
34.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
34.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
34.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
33.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
33.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
33.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
33.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
33.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
32.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
32.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
31.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
31.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
31.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
31.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
31.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
31.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
30.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
29.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
29.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
29.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
29.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
28.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
28.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
28.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
27.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
26.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
26.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
26.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
26.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
26.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
25.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
25.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
25.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
24.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
24.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
24.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
24.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
23.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
23.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
22.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
22.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
22.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
22.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
22.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
22.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
21.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
21.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
21.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
20.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
20.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
19.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
19.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
18.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
17.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
17.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
17.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
16.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
16.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
16.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
14.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
14.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
5.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 6.9
Samples: 4
Max nTPM: 8.2
Min nTPM: 6.0
Sample A
Male
8.2
Sample B
Male
6.9
Sample C
Female
6.0
Sample D
Female
6.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.