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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
619.3
nTPM
HPA Brain:
643.4
nTPM
GTEx:
619.3
nTPM
FANTOM5:
615.3
Scaled Tags Per Million
Pig:
564.2
nTPM
Mouse:
625.3
nTPM
Allen mouse:
22.8
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA040534
Antibody HPA057351
Antibody CAB007795
Glial cells
Medium
Not detected
Medium
Neuronal cells
Medium
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
643.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 643.4
2621
Female, age 67, right hemisphere
692.4
2148
Female, age 91, left hemisphere
683.9
2529
Female, age 94, left hemisphere
673.1
1898
Male, age 80, left hemisphere
658.0
1855
Male, age 76, left hemisphere
589.9
1911
Female, age 85, right hemisphere
562.7
Dentate gyrus nTPM: 628.4
2530
Female, age 94, left hemisphere
704.3
2531
Female, age 67, both hemispheres
703.5
2528
Male, age 74, both hemispheres
619.3
1927
Female, age 91, both hemispheres
617.6
2010
Male, age 76, both hemispheres
582.4
2246
Female, age 85, both hemispheres
543.2
Entorhinal gyrus nTPM: 634.3
2613
Female, age 94, left hemisphere
688.4
2117
Female, age 91, right hemisphere
656.5
2686
Male, age 75, right hemisphere
654.9
2764
Male, age 80, right hemisphere
637.2
1938
Female, age 85, left hemisphere
589.0
1787
Male, age 76, left hemisphere
579.9
Hippocampus, CA1 nTPM: 579.1
2749
Male, age 80, left hemisphere
605.9
1873
Female, age 85, both hemispheres
598.9
2527
Male, age 74, both hemispheres
595.0
2082
Female, age 91, right hemisphere
589.3
2045
Male, age 76, both hemispheres
506.3
Hippocampus, CA2 nTPM: 634.1
1963
Male, age 80, left hemisphere
873.5
2437
Female, age 94, left hemisphere
681.4
2113
Female, age 91, right hemisphere
626.5
1892
Male, age 76, both hemispheres
599.0
1940
Female, age 85, left hemisphere
559.8
2249
Male, age 74, both hemispheres
464.1
Hippocampus, CA3 nTPM: 627.6
2861
Female, age 67, both hemispheres
810.8
2620
Female, age 94, left hemisphere
641.8
2436
Male, age 74, both hemispheres
630.2
2137
Male, age 80, left hemisphere
582.7
1867
Male, age 76, both hemispheres
563.3
1891
Female, age 85, both hemispheres
537.0
Parahippocampal cortex nTPM: 590.5
2245
Female, age 91, both hemispheres
685.5
2622
Female, age 67, right hemisphere
638.2
2532
Female, age 72, left hemisphere
614.2
1990
Female, age 91, right hemisphere
589.0
2250
Female, age 67, right hemisphere
584.2
1933
Female, age 85, both hemispheres
578.3
1850
Male, age 80, both hemispheres
576.8
2018
Male, age 76, both hemispheres
570.7
2692
Male, age 74, both hemispheres
537.2
2693
Female, age 94, both hemispheres
531.1
Perirhinal gyrus nTPM: 616.2
1847
Female, age 91, left hemisphere
675.5
1794
Male, age 80, right hemisphere
664.1
2521
Female, age 94, right hemisphere
650.8
1841
Female, age 85, right hemisphere
599.0
2848
Male, age 76, right hemisphere
491.8
Subiculum nTPM: 560.2
2619
Male, age 74, both hemispheres
620.2
2729
Female, age 91, right hemisphere
599.0
1977
Female, age 85, both hemispheres
590.7
2438
Female, age 94, left hemisphere
546.3
2042
Male, age 76, both hemispheres
507.1
1901
Male, age 80, both hemispheres
497.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
619.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 619.3
Samples: 197
Max nTPM: 1743.5
Min nTPM: 258.8
Std nTPM: 207.3
Median nTPM: 578.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
1743.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
1124.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
1112.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
1106.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
1104.2
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
1095.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
1082.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
1049.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
1048.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
1032.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
998.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
996.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
982.2
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
974.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
972.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
951.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
948.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
914.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
906.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
895.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
886.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
880.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
871.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
867.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
866.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
863.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
856.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
847.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
841.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
840.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
834.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
832.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
831.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
820.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
813.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
809.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
798.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
792.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
783.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
777.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
775.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
757.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
755.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
738.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
738.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
733.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
727.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
722.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
720.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
720.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
717.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
713.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
707.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
704.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
701.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
699.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
699.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
697.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
697.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
686.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
675.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
674.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
672.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
670.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
666.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
665.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
664.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
662.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
662.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
661.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
660.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
653.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
646.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
646.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
642.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
639.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
637.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
630.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
628.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
627.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
626.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
620.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
619.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
617.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
616.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
611.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
611.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
608.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
606.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
604.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
598.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
598.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
593.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
590.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
587.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
586.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
583.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
579.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
578.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
574.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
573.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
571.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
569.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
564.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
562.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
561.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
556.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
555.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
554.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
554.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
552.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
551.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
551.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
550.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
544.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
542.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
540.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
535.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
533.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
530.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
529.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
529.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
525.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
522.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
518.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
515.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
515.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
514.4
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
513.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
513.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
510.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
509.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
506.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
505.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
502.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
502.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
495.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
489.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
487.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
477.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
473.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
473.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
471.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
471.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
469.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
465.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
463.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
461.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
461.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
459.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
457.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
455.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
452.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
452.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
445.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
443.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
441.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
439.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
436.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
435.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
435.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
433.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
432.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
430.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
429.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
428.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
425.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
424.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
417.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
416.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
415.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
415.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
414.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
412.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
410.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
409.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
407.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
402.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
398.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
397.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
395.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
393.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
392.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
392.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
378.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
375.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
373.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
368.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
353.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
344.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
339.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
337.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
335.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
329.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
327.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
321.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
258.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
625.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 625.3
Samples: 4
Max nTPM: 651.6
Min nTPM: 593.3
Sample A
Male
651.6
Sample B
Male
593.3
Sample C
Female
608.4
Sample D
Female
647.8
Hippocampal formation nTPM: 622.7
Samples: 4
Max nTPM: 669.6
Min nTPM: 594.3
Sample A
Male
594.3
Sample B
Male
601.5
Sample C
Female
625.3
Sample D
Female
669.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.