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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
10.1
nTPM
HPA Brain:
2.8
nTPM
GTEx:
10.1
nTPM
FANTOM5:
47.6
Scaled Tags Per Million
Mouse:
4.2
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 2.3
2219
Male, age 76, both hemispheres
3.1
1830
Male, age 51, unknown
2.7
2828
Female, age 72, unknown
2.5
1827
Male, age 72, unknown
2.4
2411
Female, age 72, unknown
2.3
1833
Male, age 53, unknown
2.2
2019
Male, age 18, unknown
2.2
2586
Male, age 75, left hemisphere
1.8
1870
Female, age 42, unknown
1.7
2666
Male, age 74, left hemisphere
1.7
Dorsal raphe nucleus nTPM: 2.2
2750
Male, age 76, both hemispheres
2.4
2298
Female, age 72, unknown
2.3
1828
Male, age 53, unknown
2.2
2016
Female, age 72, unknown
2.1
2047
Male, age 72, unknown
2.0
Inferior colliculus nTPM: 2.3
2849
Male, age 72, unknown
2.5
1848
Female, age 42, unknown
2.4
1890
Male, age 53, unknown
2.1
2097
Female, age 72, unknown
2.1
Median raphe nucleus nTPM: 2.8
2220
Male, age 76, midline
2.8
Periaquaductal grey, anterior nTPM: 2.2
1795
Male, age 51, unknown
2.4
2502
Female, age 75, unknown
2.3
1947
Male, age 18, unknown
1.9
Periaquaductal grey, dorsal nTPM: 2.7
2850
Male, age 76, both hemispheres
3.2
2464
Female, age 72, unknown
3.1
1831
Male, age 72, unknown
2.6
1840
Male, age 53, unknown
2.0
Periaquaductal grey, lateral nTPM: 2.7
2140
Male, age 76, both hemispheres
2.9
2272
Male, age 74, both hemispheres
2.8
2053
Male, age 18, unknown
2.4
Pretectal area nTPM: 2.3
2316
Male, age 76, right hemisphere
3.6
2273
Male, age 74, both hemispheres
2.6
2667
Female, age 75, unknown
2.6
1815
Male, age 53, unknown
2.5
1817
Female, age 42, unknown
2.2
2224
Female, age 72, unknown
2.2
2825
Male, age 18, unknown
2.2
2007
Male, age 72, unknown
1.9
2407
Male, age 75, both hemispheres
1.9
1816
Male, age 51, unknown
1.8
1944
Female, age 72, unknown
1.7
Red nucleus nTPM: 2.3
2584
Male, age 75, left hemisphere
3.4
2823
Male, age 76, right hemisphere
3.0
2769
Male, age 72, unknown
2.6
2227
Male, age 72, unknown
2.5
1865
Male, age 51, unknown
2.3
2785
Male, age 18, unknown
2.3
1954
Female, age 42, unknown
2.1
2503
Female, age 72, unknown
2.1
2725
Female, age 75, unknown
2.1
1904
Male, age 53, unknown
2.0
1821
Female, age 72, unknown
1.9
2588
Male, age 74, left hemisphere
1.3
Substantia nigra nTPM: 2.1
1941
Male, age 53, unknown
2.6
2590
Female, age 75, unknown
2.6
2699
Male, age 18, unknown
2.4
2241
Male, age 72, unknown
2.3
2665
Male, age 74, both hemispheres
2.3
1916
Female, age 42, unknown
2.1
1851
Male, age 51, unknown
1.9
1889
Female, age 72, unknown
1.7
2583
Male, age 75, right hemisphere
1.7
2409
Female, age 72, unknown
1.4
Superior colliculus nTPM: 2.2
1913
Female, age 42, unknown
2.7
2087
Female, age 72, unknown
2.6
1839
Male, age 51, unknown
2.5
2261
Male, age 18, unknown
2.4
2587
Male, age 74, left hemisphere
2.3
1796
Male, age 53, unknown
2.2
1895
Male, age 76, right hemisphere
2.1
1995
Male, age 72, unknown
1.8
2664
Male, age 75, both hemispheres
1.6
2668
Female, age 75, unknown
1.5
Ventral tegmental area nTPM: 2.3
2218
Male, age 76, both hemispheres
3.2
2021
Male, age 53, unknown
2.6
2223
Female, age 72, unknown
2.1
1915
Female, age 42, unknown
1.9
2410
Female, age 72, unknown
1.9
1942
Male, age 51, unknown
1.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 10.1
Samples: 139
Max nTPM: 50.2
Min nTPM: 0.3
Std nTPM: 9.6
Median nTPM: 7.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
50.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
45.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
43.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
42.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
38.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
38.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
36.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
31.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
30.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
30.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
25.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
24.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
24.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
23.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
20.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
19.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
17.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
17.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
17.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
16.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
16.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
15.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
15.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
15.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
15.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
15.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
15.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
15.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
14.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
14.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
13.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
13.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
12.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
12.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
12.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
12.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
11.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
11.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
11.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
11.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
10.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
10.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
10.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
10.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
10.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
10.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
9.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
9.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
9.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
9.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
9.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
9.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
9.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
9.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
8.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
8.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
8.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
8.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
8.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
8.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
8.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
7.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
7.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
7.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
7.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
7.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
7.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
7.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
7.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
7.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
7.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
7.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
6.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
6.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
6.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
6.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
6.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
6.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
6.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
6.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
6.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
5.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
5.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
5.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
5.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
5.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
5.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
5.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
5.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
5.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
5.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
4.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
4.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
4.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
4.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
4.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
4.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
4.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
4.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
4.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
4.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
3.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
3.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
3.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
3.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
3.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
3.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
3.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
3.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
3.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
3.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
3.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
3.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
3.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
3.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
2.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
2.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
2.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
2.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
2.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
2.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
2.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
2.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
2.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
2.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
2.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
0.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
0.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 4.2
Samples: 4
Max nTPM: 5.0
Min nTPM: 3.6
Sample A
Male
3.6
Sample B
Male
4.6
Sample C
Female
3.6
Sample D
Female
5.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.