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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1629.7
nTPM
Monaco:
816.4
nTPM
Schmiedel:
1770.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1629.7
HPA sample
nTPM
gdT-cell nTPM: 1434.7
Samples: 6
Max nTPM: 1701.5
Min nTPM: 1242.0
P10809_1007
1412.2
P10809_1022
1413.1
P10809_1041
1701.5
P10809_1060
1242.0
P10809_1077
1507.7
P10809_1098
1331.7
MAIT T-cell nTPM: 971.2
Samples: 6
Max nTPM: 1120.0
Min nTPM: 769.3
P10809_1006
769.3
P10809_1024
1120.0
P10809_1043
914.2
P10809_1062
929.7
P10809_1083
1009.1
P10809_1097
1084.8
Memory CD4 T-cell nTPM: 1184.8
Samples: 6
Max nTPM: 1369.7
Min nTPM: 1012.3
P10809_1014
1012.3
P10809_1026
1239.8
P10809_1045
1095.8
P10809_1064
1296.2
P10809_1086
1369.7
P10809_1113
1094.7
Memory CD8 T-cell nTPM: 1338.7
Samples: 5
Max nTPM: 1617.1
Min nTPM: 1006.9
P10809_1012
1006.9
P10809_1027
1534.2
P10809_1046
1328.7
P10809_1065
1617.1
P10809_1111
1206.4
Naive CD4 T-cell nTPM: 1071.7
Samples: 6
Max nTPM: 1262.5
Min nTPM: 861.1
P10809_1015
861.1
P10809_1030
1245.1
P10809_1049
1262.5
P10809_1068
912.3
P10809_1085
1084.9
P10809_1112
1064.0
Naive CD8 T-cell nTPM: 1320.3
Samples: 6
Max nTPM: 1609.6
Min nTPM: 1089.3
P10809_1016
1118.8
P10809_1031
1327.7
P10809_1050
1384.5
P10809_1069
1391.6
P10809_1087
1609.6
P10809_1110
1089.3
T-reg nTPM: 1629.7
Samples: 6
Max nTPM: 1925.7
Min nTPM: 1252.1
P10809_1018
1252.1
P10809_1037
1856.4
P10809_1056
1925.7
P10809_1075
1527.1
P10809_1094
1719.1
P10809_1106
1497.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
816.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 417.1
Samples: 4
Max nTPM: 542.1
Min nTPM: 305.2
RHH5202_R3573
305.2
RHH5230_R3602
363.2
RHH5259_R3631
457.9
RHH5288_R3660
542.1
Effector memory CD8 T-cell nTPM: 402.7
Samples: 4
Max nTPM: 500.9
Min nTPM: 337.8
RHH5203_R3574
413.8
RHH5231_R3603
358.4
RHH5260_R3632
500.9
RHH5289_R3661
337.8
MAIT T-cell nTPM: 455.5
Samples: 4
Max nTPM: 509.9
Min nTPM: 415.6
RHH5233_R3605
457.3
RHH5205_R3576
439.0
RHH5262_R3634
415.6
RHH5297_R3663
509.9
Memory CD4 T-cell TFH nTPM: 490.6
Samples: 4
Max nTPM: 714.3
Min nTPM: 345.0
RHH5300_R3666
504.0
RHH5236_R3608
714.3
RHH5265_R3637
345.0
RHH5208_R3579
399.2
Memory CD4 T-cell Th1 nTPM: 518.0
Samples: 4
Max nTPM: 745.0
Min nTPM: 290.0
RHH5210_R3581
290.0
RHH5302_R3668
745.0
RHH5238_R3610
540.8
RHH5267_R3639
496.0
Memory CD4 T-cell Th1/Th17 nTPM: 446.3
Samples: 4
Max nTPM: 563.0
Min nTPM: 308.5
RHH5303_R3669
563.0
RHH5211_R3582
308.5
RHH5239_R3611
400.2
RHH5268_R3640
513.4
Memory CD4 T-cell Th17 nTPM: 403.3
Samples: 4
Max nTPM: 509.2
Min nTPM: 305.7
RHH5304_R3670
509.2
RHH5212_R3583
305.7
RHH5240_R3612
425.0
RHH5269_R3641
373.4
Memory CD4 T-cell Th2 nTPM: 454.0
Samples: 4
Max nTPM: 616.1
Min nTPM: 332.8
RHH5305_R3671
616.1
RHH5213_R3584
332.8
RHH5241_R3613
445.5
RHH5270_R3642
421.4
Naive CD4 T-cell nTPM: 451.9
Samples: 4
Max nTPM: 604.1
Min nTPM: 260.5
RHH5306_R3672
565.1
RHH5214_R3585
604.1
RHH5242_R3614
260.5
RHH5271_R3643
377.7
Naive CD8 T-cell nTPM: 388.9
Samples: 4
Max nTPM: 457.4
Min nTPM: 336.4
RHH5201_R3572
336.4
RHH5229_R3601
413.2
RHH5258_R3630
348.4
RHH5287_R3659
457.4
Non-Vd2 gdTCR nTPM: 661.7
Samples: 4
Max nTPM: 891.8
Min nTPM: 506.7
RHH5235_R3607
506.7
RHH5264_R3636
635.9
RHH5207_R3578
612.2
RHH5299_R3665
891.8
T-reg nTPM: 479.4
Samples: 4
Max nTPM: 639.5
Min nTPM: 416.6
RHH5301_R3667
639.5
RHH5237_R3609
425.7
RHH5266_R3638
435.7
RHH5209_R3580
416.6
Terminal effector memory CD4 T-cell nTPM: 432.6
Samples: 2
Max nTPM: 446.9
Min nTPM: 418.3
RHH5243_R3615
418.3
RHH5272_R3644
446.9
Terminal effector memory CD8 T-cell nTPM: 816.4
Samples: 4
Max nTPM: 1461.0
Min nTPM: 483.5
RHH5232_R3604
483.5
RHH5204_R3575
1461.0
RHH5261_R3633
629.3
RHH5296_R3662
691.8
Vd2 gdTCR nTPM: 786.9
Samples: 4
Max nTPM: 1360.2
Min nTPM: 444.8
RHH5234_R3606
444.8
RHH5206_R3577
1360.2
RHH5263_R3635
570.7
RHH5298_R3664
771.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.