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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
High
Outer plexiform layer:
Not detected
Photoreceptor cells:
Not detected
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
305.3
nTPM
GTEx:
305.3
nTPM
FANTOM5:
104.2
Scaled Tags Per Million
Pig:
345.2
nTPM
Mouse:
582.4
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA047627
Pigment epithelial cells
Not detected
Immunohistochemical staining of human retina shows strong positivity in plexiform layers.
50 ฮผm
Photoreceptor cells
Low
Limiting membrane
Not detected
Outer plexiform layer
High
Inner nuclear layer
Not detected
Inner plexiform layer
High
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
305.3
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 305.3
Samples: 105
Max nTPM: 478.9
Min nTPM: 140.4
Std nTPM: 61.3
Median nTPM:
415_1
77 years, female
478.9
246_1
77 years, male
439.9
490_1
67 years, female
438.5
414_1
84 years, female
434.3
413_1
59 years, female
431.9
466_1
57 years, female
418.9
35_1
74 years, female
414.3
217_1
76 years, male
409.3
162_1
79 years, female
402.1
126_1
63 years, male
390.5
324_1
76 years, male
386.4
149_1
88 years, male
381.8
43_1
64 years, female
376.3
229_1
69 years, female
375.4
468_1
89 years, male
368.3
153_1
70 years, female
367.1
375_1
74 years, female
365.0
237_1
82 years, male
357.5
315_1
62 years, female
357.1
6_1
73 years, female
351.1
251_1
78 years, male
350.7
377_1
82 years, female
350.0
81_1
67 years, male
348.7
32_1
67 years, male
348.2
447_1
81 years, male
345.8
265_1
87 years, male
341.9
389_1
86 years, female
340.7
319_1
81 years, male
340.3
142_1
61 years, female
337.3
316_1
62 years, male
337.1
518_1
75 years, female
336.4
405_1
91 years, male
332.9
396_1
62 years, male
328.2
254_1
77 years, female
325.6
139_1
64 years, female
324.9
17_1
71 years, male
324.7
425_1
59 years, female
322.8
526_1
61 years, male
322.4
266_1
85 years, male
322.0
491_1
89 years, female
320.5
386_1
76 years, male
320.3
189_1
76 years, male
318.7
322_1
76 years, male
317.2
115_1
83 years, male
316.5
117_1
61 years, male
315.0
9_1
66 years, female
314.6
18_1
88 years, male
311.1
145_1
84 years, male
308.9
172_1
72 years, female
308.0
379_1
60 years, male
304.8
503_1
68 years, male
304.4
335_1
73 years, female
303.9
384_1
83 years, male
302.3
318_1
68 years, male
298.2
480_1
63 years, male
298.1
89_1
63 years, male
297.3
501_1
88 years, male
296.2
352_1
62 years, male
295.2
376_1
75 years, female
295.2
137_1
83 years, male
295.0
311_1
78 years, male
294.2
404_1
82 years, female
292.6
313_1
79 years, female
291.3
499_1
55 years, female
288.8
307_1
66 years, female
287.5
347_1
72 years, male
287.4
243_1
75 years, male
285.8
495_1
57 years, female
284.8
321_1
62 years, female
283.8
292_1
71 years, male
280.7
2_1
77 years, female
277.8
177_1
74 years, male
275.4
406_1
79 years, male
270.6
348_1
84 years, male
268.2
218_1
71 years, female
266.9
517_1
88 years, male
263.4
119_1
70 years, female
262.4
288_1
66 years, female
261.1
355_1
70 years, female
260.6
354_1
81 years, female
258.9
394_1
75 years, female
258.2
4_1
88 years, female
257.8
99_1
64 years, male
256.7
293_1
68 years, female
256.0
350_1
84 years, female
254.6
286_1
68 years, female
254.0
42_1
85 years, male
251.8
120_1
70 years, female
249.3
320_1
89 years, female
246.8
291_1
76 years, male
245.3
173_1
67 years, male
242.5
314_1
67 years, male
242.1
109_1
81 years, female
236.9
351_1
91 years, male
231.9
317_1
60 years, male
228.5
356_1
87 years, female
227.4
264_1
73 years, female
225.4
349_1
83 years, male
224.9
163_1
78 years, male
221.3
353_1
82 years, female
216.3
41_1
94 years, female
214.3
506_1
65 years, male
189.0
295_1
61 years, female
188.4
452_1
88 years, female
184.0
308_1
70 years, female
140.4
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.