We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
15.1
nTPM
HPA Brain:
66.7
nTPM
GTEx:
15.1
nTPM
FANTOM5:
4.8
Scaled Tags Per Million
Pig:
86.5
nTPM
Mouse:
28.0
nTPM
Allen mouse:
3.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 14.5
2219
Male, age 76, both hemispheres
41.2
2586
Male, age 75, left hemisphere
17.6
1833
Male, age 53, unknown
17.2
1830
Male, age 51, unknown
15.5
2411
Female, age 72, unknown
14.0
2019
Male, age 18, unknown
12.4
2666
Male, age 74, left hemisphere
10.1
1827
Male, age 72, unknown
6.5
1870
Female, age 42, unknown
5.4
2828
Female, age 72, unknown
5.3
Dorsal raphe nucleus nTPM: 23.0
1828
Male, age 53, unknown
30.6
2047
Male, age 72, unknown
28.8
2298
Female, age 72, unknown
20.0
2016
Female, age 72, unknown
18.0
2750
Male, age 76, both hemispheres
17.2
Inferior colliculus nTPM: 9.5
1890
Male, age 53, unknown
14.1
2097
Female, age 72, unknown
9.5
2849
Male, age 72, unknown
7.3
1848
Female, age 42, unknown
7.2
Median raphe nucleus nTPM: 38.1
2220
Male, age 76, midline
38.1
Periaquaductal grey, anterior nTPM: 5.5
2502
Female, age 75, unknown
7.8
1795
Male, age 51, unknown
4.6
1947
Male, age 18, unknown
4.1
Periaquaductal grey, dorsal nTPM: 10.3
1840
Male, age 53, unknown
11.8
2464
Female, age 72, unknown
11.3
1831
Male, age 72, unknown
10.5
2850
Male, age 76, both hemispheres
7.8
Periaquaductal grey, lateral nTPM: 7.1
2140
Male, age 76, both hemispheres
9.3
2272
Male, age 74, both hemispheres
7.5
2053
Male, age 18, unknown
4.6
Pretectal area nTPM: 9.6
2007
Male, age 72, unknown
16.7
1944
Female, age 72, unknown
13.3
2224
Female, age 72, unknown
11.8
1815
Male, age 53, unknown
11.6
1817
Female, age 42, unknown
11.6
2667
Female, age 75, unknown
10.9
2825
Male, age 18, unknown
7.4
2316
Male, age 76, right hemisphere
6.0
2407
Male, age 75, both hemispheres
5.9
1816
Male, age 51, unknown
5.6
2273
Male, age 74, both hemispheres
5.1
Red nucleus nTPM: 7.8
2785
Male, age 18, unknown
14.3
1821
Female, age 72, unknown
12.1
2584
Male, age 75, left hemisphere
10.8
2769
Male, age 72, unknown
9.0
1954
Female, age 42, unknown
8.1
2725
Female, age 75, unknown
7.8
2227
Male, age 72, unknown
7.5
1904
Male, age 53, unknown
5.6
2503
Female, age 72, unknown
5.5
1865
Male, age 51, unknown
4.7
2588
Male, age 74, left hemisphere
4.7
2823
Male, age 76, right hemisphere
3.9
Substantia nigra nTPM: 66.7
1916
Female, age 42, unknown
122.0
2699
Male, age 18, unknown
103.4
1851
Male, age 51, unknown
95.5
2665
Male, age 74, both hemispheres
86.3
2241
Male, age 72, unknown
77.1
2409
Female, age 72, unknown
72.8
1941
Male, age 53, unknown
60.7
1889
Female, age 72, unknown
25.5
2583
Male, age 75, right hemisphere
15.1
2590
Female, age 75, unknown
8.0
Superior colliculus nTPM: 9.0
2668
Female, age 75, unknown
27.0
2087
Female, age 72, unknown
11.1
1895
Male, age 76, right hemisphere
9.5
2664
Male, age 75, both hemispheres
8.6
1796
Male, age 53, unknown
8.5
1839
Male, age 51, unknown
7.2
2587
Male, age 74, left hemisphere
5.4
1913
Female, age 42, unknown
5.3
2261
Male, age 18, unknown
3.7
1995
Male, age 72, unknown
3.3
Ventral tegmental area nTPM: 57.7
2410
Female, age 72, unknown
112.2
2218
Male, age 76, both hemispheres
73.4
1915
Female, age 42, unknown
71.4
1942
Male, age 51, unknown
52.2
2223
Female, age 72, unknown
26.7
2021
Male, age 53, unknown
10.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 15.1
Samples: 139
Max nTPM: 72.4
Min nTPM: 0.2
Std nTPM: 16.1
Median nTPM: 9.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
72.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
63.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
62.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
60.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
57.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
52.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
50.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
47.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
46.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
46.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
44.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
43.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
41.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
40.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
40.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
39.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
39.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
37.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
33.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
31.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
31.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
29.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
28.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
28.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
27.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
26.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
26.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
26.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
25.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
25.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
24.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
24.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
24.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
23.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
22.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
22.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
22.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
21.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
21.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
20.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
19.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
19.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
18.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
18.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
18.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
17.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
17.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
16.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
15.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
15.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
14.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
14.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
14.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
14.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
14.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
13.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
13.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
13.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
12.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
12.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
12.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
12.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
12.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
10.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
10.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
10.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
9.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
9.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
9.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
9.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
9.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
9.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
9.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
8.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
8.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
8.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
7.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
6.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
6.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
6.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
6.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
6.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
5.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
5.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
5.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
5.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
5.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
5.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
5.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
4.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
4.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
3.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
3.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
3.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
3.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
3.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
3.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
3.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
3.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
3.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
2.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
2.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
2.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
2.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
2.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
0.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
0.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
0.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
0.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
0.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
0.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
0.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
0.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
0.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
0.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
0.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
0.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
0.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
0.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
0.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
0.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
0.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
0.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
0.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
0.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.2
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 28.0
Samples: 4
Max nTPM: 32.5
Min nTPM: 22.5
Sample A
Male
22.5
Sample B
Male
27.5
Sample C
Female
32.5
Sample D
Female
29.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.