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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PHYHIPL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PHYHIPL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.5
Number of samples
231
Samples
Sample
Description
TPM
DO23529
0 years, male, NA, stage:4, alive, 930 days
51.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
1.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
2.7
715
Tumor
2.6
131
Tumor
2.4
743
Tumor
2.2
147
Tumor
2.0
351
Tumor
2.0
393
Tumor
2.0
685
Tumor
2.0
877
Tumor
1.9
451
Tumor
1.9
965
Tumor
1.8
1031
Tumor
1.7
171
Tumor
1.7
815
Tumor
1.7
285
Tumor
1.7
483
Tumor
1.5
553
Tumor
1.4
953
Tumor
1.4
915
Tumor
1.3
967
Tumor
1.3
331
Tumor
1.2
1043
Tumor
1.2
227
Tumor
1.2
943
Tumor
1.1
125
Tumor
1.1
127
Tumor
1.1
425
Tumor
1.1
911
Tumor
1.1
537
Tumor
1.1
231
Tumor
1.0
567
Tumor
1.0
517
Tumor
1.0
661
Tumor
1.0
1027
Tumor
1.0
413
Tumor
1.0
851
Tumor
1.0
257
Tumor
0.9
391
Tumor
0.9
867
Tumor
0.9
363
Tumor
0.9
665
Tumor
0.9
557
Tumor
0.8
741
Tumor
0.8
977
Tumor
0.7
957
Tumor
0.7
221
Tumor
0.7
493
Tumor
0.7
861
Tumor
0.6
737
Tumor
0.6
1015
Tumor
0.5
463
Tumor
0.5
411
Tumor
0.5
297
Tumor
0.5
1025
Tumor
0.5
365
Tumor
0.5
261
Tumor
0.4
923
Tumor
0.4
313
Tumor
0.4
983
Tumor
0.4
385
Tumor
0.3
981
Tumor
0.3
533
Tumor
0.3
395
Tumor
0.3
481
Tumor
0.3
435
Tumor
0.3
1013
Tumor
0.3
951
Tumor
0.3
431
Tumor
0.3
745
Tumor
0.3
635
Tumor
0.3
357
Tumor
0.2
647
Tumor
0.2
663
Tumor
0.2
1041
Tumor
0.2
375
Tumor
0.2
724
Normal
0.2
123
Tumor
0.2
975
Tumor
0.2
1021
Tumor
0.1
744
Normal
0.1
865
Tumor
0.1
545
Tumor
0.1
671
Tumor
0.1
535
Tumor
0.1
523
Tumor
0.1
394
Normal
0.1
271
Tumor
0.1
813
Tumor
0.1
443
Tumor
0.0
881
Tumor
0.0
388
Normal
0.0
641
Tumor
0.0
277
Tumor
0.0
465
Tumor
0.0
477
Tumor
0.0
161
Tumor
0.0
112
Tumor
0.0
921
Tumor
0.0
332
Normal
-0.1
341
Tumor
-0.1
113
Tumor
-0.1
187
Tumor
-0.1
392
Normal
-0.1
1032
Normal
-0.2
298
Normal
-0.2
132
Normal
-0.2
727
Tumor
-0.2
722
Normal
-0.2
716
Normal
-0.2
355
Tumor
-0.2
312
Normal
-0.2
383
Tumor
-0.2
314
Normal
-0.2
446
Normal
-0.2
436
Normal
-0.2
367
Tumor
-0.2
873
Tumor
-0.3
963
Tumor
-0.3
958
Normal
-0.3
964
Normal
-0.3
396
Normal
-0.3
714
Normal
-0.3
721
Tumor
-0.3
217
Tumor
-0.3
135
Tumor
-0.3
883
Tumor
-0.3
742
Normal
-0.3
695
Tumor
-0.3
141
Tumor
-0.3
571
Tumor
-0.3
666
Normal
-0.3
387
Tumor
-0.3
386
Normal
-0.3
728
Normal
-0.4
445
Tumor
-0.4
278
Normal
-0.4
686
Normal
-0.4
538
Normal
-0.4
554
Normal
-0.4
361
Tumor
-0.4
1042
Normal
-0.4
185
Tumor
-0.4
874
Normal
-0.4
138
Normal
-0.4
433
Tumor
-0.4
878
Normal
-0.4
528
Normal
-0.4
515
Tumor
-0.4
286
Normal
-0.4
356
Normal
-0.4
968
Normal
-0.4
917
Tumor
-0.4
136
Normal
-0.4
696
Normal
-0.4
1028
Normal
-0.5
534
Normal
-0.5
444
Normal
-0.5
966
Normal
-0.5
352
Normal
-0.5
145
Tumor
-0.5
472
Normal
-0.5
142
Normal
-0.5
311
Tumor
-0.5
1022
Normal
-0.5
471
Tumor
-0.5
412
Normal
-0.5
713
Tumor
-0.5
384
Normal
-0.5
823
Tumor
-0.5
426
Normal
-0.5
976
Normal
-0.5
864
Normal
-0.5
467
Tumor
-0.5
1026
Normal
-0.5
344
Normal
-0.5
662
Normal
-0.5
432
Normal
-0.5
191
Tumor
-0.5
918
Normal
-0.5
342
Normal
-0.5
195
Tumor
-0.5
617
Tumor
-0.5
723
Tumor
-0.5
916
Normal
-0.5
478
Normal
-0.5
427
Tumor
-0.5
546
Normal
-0.5
746
Normal
-0.5
866
Normal
-0.5
212
Normal
-0.5
284
Normal
-0.5
213
Tumor
-0.5
354
Normal
-0.6
926
Normal
-0.6
755
Tumor
-0.6
955
Tumor
-0.6
484
Normal
-0.6
146
Normal
-0.6
516
Normal
-0.6
497
Tumor
-0.6
474
Normal
-0.6
494
Normal
-0.6
434
Normal
-0.6
862
Normal
-0.6
956
Normal
-0.6
738
Normal
-0.6
128
Normal
-0.6
818
Normal
-0.6
456
Normal
-0.6
464
Normal
-0.6
922
Normal
-0.6
423
Tumor
-0.6
268
Normal
-0.6
455
Tumor
-0.6
428
Normal
-0.6
857
Tumor
-0.6
283
Tumor
-0.6
488
Normal
-0.6
461
Tumor
-0.6
232
Normal
-0.6
568
Normal
-0.6
525
Tumor
-0.6
938
Normal
-0.6
224
Normal
-0.6
364
Normal
-0.6
924
Normal
-0.6
422
Normal
-0.6
536
Normal
-0.6
824
Normal
-0.6
882
Normal
-0.7
952
Normal
-0.7
1014
Normal
-0.7
925
Tumor
-0.7
492
Normal
-0.7
482
Normal
-0.7
228
Normal
-0.7
982
Normal
-0.7
868
Normal
-0.7
1016
Normal
-0.7
698
Normal
-0.7
672
Normal
-0.7
421
Tumor
-0.7
574
Normal
-0.7
852
Normal
-0.7
415
Tumor
-0.7
452
Normal
-0.7
527
Tumor
-0.7
944
Normal
-0.7
648
Normal
-0.7
884
Normal
-0.7
376
Normal
-0.8
272
Normal
-0.8
448
Normal
-0.8
358
Normal
-0.8
258
Normal
-0.8
353
Tumor
-0.8
424
Normal
-0.8
618
Normal
-0.8
912
Normal
-0.8
615
Tumor
-0.8
954
Normal
-0.8
262
Normal
-0.8
196
Normal
-0.8
137
Tumor
-0.8
192
Normal
-0.8
148
Normal
-0.8
498
Normal
-0.8
368
Normal
-0.8
914
Normal
-0.8
984
Normal
-0.8
572
Normal
-0.8
468
Normal
-0.8
524
Normal
-0.8
778
Normal
-0.8
664
Normal
-0.8
858
Normal
-0.8
362
Normal
-0.8
616
Normal
-0.9
447
Tumor
-0.9
223
Tumor
-0.9
1044
Normal
-0.9
466
Normal
-0.9
328
Normal
-0.9
573
Tumor
-0.9
816
Normal
-0.9
186
Normal
-0.9
414
Normal
-0.9
162
Normal
-0.9
172
Normal
-0.9
462
Normal
-0.9
628
Normal
-0.9
126
Normal
-0.9
786
Normal
-0.9
642
Normal
-0.9
564
Normal
-0.9
526
Normal
-0.9
214
Normal
-0.9
416
Normal
-0.9
514
Normal
-0.9
636
Normal
-0.9
114
Normal
-1.0
756
Normal
-1.0
518
Normal
-1.0
343
Tumor
-1.0
1046
Normal
-1.0
563
Tumor
-1.0
978
Normal
-1.0
697
Tumor
-1.0
124
Normal
-1.0
558
Normal
-1.0
188
Normal
-1.0
814
Normal
-1.0
111
Normal
-1.0
222
Normal
-1.0
366
Normal
-1.0
937
Tumor
-1.1
491
Tumor
-1.1
785
Tumor
-1.1
218
Normal
-1.1
267
Tumor
-1.2
327
Tumor
-1.3
913
Tumor
-1.3
777
Tumor
-1.3
513
Tumor
-1.4
211
Tumor
-1.4
627
Tumor
-1.4
817
Tumor
-1.4
1045
Tumor
-1.5
863
Tumor
-1.5
487
Tumor
-3.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
