BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:273.9 nTPM
HPA Brain:241.8 nTPM
GTEx:273.9 nTPM
FANTOM5:538.2 Scaled Tags Per Million
Pig:76.2 nTPM
Mouse:173.3 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA027132
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 241.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 213.2
2481 Female, age 94, left hemisphere 368.5
2288 Male, age 75, left hemisphere 215.0
2289 Male, age 61, right hemisphere 211.1
2290 Female, age 72, unknown 196.3
1781 Male, age 74, unknown 195.3
1857 Female, age 85, left hemisphere 186.0
1854 Male, age 80, left hemisphere 180.1
2846 Female, age 79, unknown 152.9
Globus pallidus, externus
nTPM: 241.8
1996 Male, age 80, right hemisphere 290.6
2646 Male, age 61, right hemisphere 283.1
2567 Female, age 72, unknown 224.7
2772 Female, age 79, unknown 216.5
2395 Male, age 75, both hemispheres 194.2
Globus pallidus, internus
nTPM: 240.0
2483 Female, age 94, right hemisphere 366.7
2287 Male, age 75, right hemisphere 260.7
2037 Male, age 80, right hemisphere 248.3
1818 Male, age 74, unknown 233.9
2111 Female, age 85, right hemisphere 198.7
2778 Female, age 91, both hemispheres 190.2
2566 Female, age 72, unknown 181.3
Nucleus accumbens
nTPM: 150.5
2391 Female, age 94, left hemisphere 200.2
2286 Male, age 75, left hemisphere 199.0
1806 Female, age 85, left hemisphere 156.3
2698 Female, age 72, unknown 141.3
1783 Male, age 74, unknown 140.2
2732 Male, age 80, right hemisphere 129.8
1856 Female, age 91, right hemisphere 125.7
2824 Male, age 61, right hemisphere 111.6
Nucleus basalis of Meynert
nTPM: 218.5
2569 Male, age 61, both hemispheres 326.4
2484 Female, age 94, left hemisphere 231.0
2393 Male, age 80, right hemisphere 180.9
2821 Male, age 75, both hemispheres 135.8
Nucleus of the diagonal band
nTPM: 176.1
2775 Male, age 80, right hemisphere 204.2
1812 Female, age 91, both hemispheres 183.2
1979 Male, age 74, unknown 174.5
2195 Female, age 85, both hemispheres 163.1
2029 Male, age 61, right hemisphere 155.4
Putamen
nTPM: 197.7
2482 Female, age 94, left hemisphere 292.3
2647 Male, age 75, left hemisphere 240.2
2489 Female, age 72, unknown 237.4
2466 Female, age 79, unknown 171.0
1829 Male, age 74, unknown 159.6
1937 Female, age 91, right hemisphere 142.7
1838 Male, age 80, right hemisphere 140.9
Septal nuclei
nTPM: 180.6
2031 Female, age 72, unknown 215.6
2199 Male, age 80, right hemisphere 203.9
2059 Female, age 85, both hemispheres 190.8
1960 Male, age 74, unknown 181.2
2394 Male, age 61, left hemisphere 179.7
2009 Female, age 91, both hemispheres 164.7
2629 Female, age 94, right hemisphere 128.5
Stria terminalis, bed nucleus
nTPM: 175.8
1974 Female, age 91, both hemispheres 195.9
2201 Male, age 74, unknown 193.7
2486 Female, age 94, both hemispheres 137.8

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 273.9
GTEx sample id Sample description nTPM
170.2214.0300.660.2489.8050100150200250300350400450500550
Brain - Caudate (basal ganglia)
Average nTPM: 240.0
Samples: 246

Max nTPM: 570.4
Min nTPM: 60.2
Std nTPM: 95.0
Median nTPM: 214.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 570.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 506.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 499.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 489.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 478.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 474.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 460.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 459.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 453.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 446.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 444.2
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109.0139.8185.651.8299.0050100150200250300350400
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 155.5
Samples: 246

Max nTPM: 418.2
Min nTPM: 51.8
Std nTPM: 64.5
Median nTPM: 139.8
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 418.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 416.4
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 385.3
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 373.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 360.1
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 334.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 303.1
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 301.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 299.0
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 290.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 278.6
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193.6253.8341.372.9555.80100200300400500600700800
Brain - Putamen (basal ganglia)
Average nTPM: 273.9
Samples: 205

Max nTPM: 817.2
Min nTPM: 72.9
Std nTPM: 115.6
Median nTPM: 253.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 817.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 583.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 578.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 567.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 565.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 555.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 540.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 531.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 512.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 471.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 463.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 538.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 264.5
FF:10164-103B2 76 years, female 264.5
Nucleus accumbens
Scaled Tags Per Million: 284.8
FF:10037-101F1 23-56 years, mixed 284.8
Putamen
Scaled Tags Per Million: 259.1
FF:10176-103C5 60 years, female 259.1
Globus pallidus
Scaled Tags Per Million: 538.2
FF:10175-103C4 60 years, female 610.5
FF:10161-103A8 76 years, female 466.0

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 76.2
Pig sample Sample description nTPM
56.161.365.850.968.605101520253035404550556065
 		Caudate
nTPM: 60.5
Samples: 4

Max nTPM: 68.6
Min nTPM: 50.9
Sample A Female 50.9
Sample B Female 68.6
Sample C Male 64.8
Sample D Male 57.8
60.266.272.859.775.1010203040506070
 		Putamen
nTPM: 66.8
Samples: 4

Max nTPM: 75.1
Min nTPM: 59.7
Sample A Female 72.0
Sample B Female 60.4
Sample C Male 75.1
Sample D Male 59.7
68.373.681.565.991.70102030405060708090
 		Septum
nTPM: 76.2
Samples: 4

Max nTPM: 91.7
Min nTPM: 65.9
Sample A Female 69.1
Sample B Female 78.1
Sample C Male 65.9
Sample D Male 91.7
59.666.574.859.079.1010203040506070
 		Ventral pallidum
nTPM: 67.8
Samples: 4

Max nTPM: 79.1
Min nTPM: 59.0
Sample A Female 59.0
Sample B Female 79.1
Sample C Male 73.3
Sample D Male 59.8

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 173.3
Mouse sample Sample description nTPM
127.5141.8158.8126.6167.5020406080100120140160
 		Caudate putamen
nTPM: 144.5
Samples: 4

Max nTPM: 167.5
Min nTPM: 126.6
Sample A Male 126.6
Sample B Male 127.8
Sample C Female 155.9
Sample D Female 167.5
159.7166.4180.1150.4209.9020406080100120140160180200
 		Septum
nTPM: 173.3
Samples: 4

Max nTPM: 209.9
Min nTPM: 150.4
Sample A Male 150.4
Sample B Male 209.9
Sample C Female 170.1
Sample D Female 162.8
157.6159.8164.1151.7160.1020406080100120140160
 		Ventral forebrain
nTPM: 161.9
Samples: 4

Max nTPM: 176.1
Min nTPM: 151.7
Sample A Male 159.5
Sample B Male 151.7
Sample C Female 176.1
Sample D Female 160.1

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
69528040 Antisense, RP_050421_03_A03, Mouse strain C57BL/6J (56 days, male) 1.1
73520964 Antisense, RP_051017_04_E04, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.5
69528040 Antisense, RP_050421_03_A03, Mouse strain C57BL/6J (56 days, male) 1.0
73520964 Antisense, RP_051017_04_E04, Mouse strain C57BL/6J (56 days, male) 0.0

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