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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
12.2
nTPM
HPA Brain:
25.8
nTPM
GTEx:
12.2
nTPM
FANTOM5:
26.1
Scaled Tags Per Million
Mouse:
9.4
nTPM
Allen mouse:
0.3
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
25.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 22.1
2586
Male, age 75, left hemisphere
30.6
2219
Male, age 76, both hemispheres
26.3
2828
Female, age 72, unknown
23.8
2019
Male, age 18, unknown
23.4
2666
Male, age 74, left hemisphere
22.6
1830
Male, age 51, unknown
19.7
1833
Male, age 53, unknown
19.5
1870
Female, age 42, unknown
19.2
2411
Female, age 72, unknown
18.0
1827
Male, age 72, unknown
17.8
Dorsal raphe nucleus nTPM: 18.8
2047
Male, age 72, unknown
21.5
2750
Male, age 76, both hemispheres
21.1
2016
Female, age 72, unknown
18.6
1828
Male, age 53, unknown
18.0
2298
Female, age 72, unknown
14.9
Inferior colliculus nTPM: 20.1
1848
Female, age 42, unknown
23.3
1890
Male, age 53, unknown
19.8
2849
Male, age 72, unknown
19.8
2097
Female, age 72, unknown
17.5
Median raphe nucleus nTPM: 25.8
2220
Male, age 76, midline
25.8
Periaquaductal grey, anterior nTPM: 19.0
1947
Male, age 18, unknown
21.3
2502
Female, age 75, unknown
19.5
1795
Male, age 51, unknown
16.3
Periaquaductal grey, dorsal nTPM: 16.5
2464
Female, age 72, unknown
18.9
1840
Male, age 53, unknown
17.2
1831
Male, age 72, unknown
15.5
2850
Male, age 76, both hemispheres
14.4
Periaquaductal grey, lateral nTPM: 16.9
2140
Male, age 76, both hemispheres
19.9
2053
Male, age 18, unknown
17.2
2272
Male, age 74, both hemispheres
13.6
Pretectal area nTPM: 18.1
2007
Male, age 72, unknown
23.3
1817
Female, age 42, unknown
22.2
1815
Male, age 53, unknown
20.5
1944
Female, age 72, unknown
19.1
2316
Male, age 76, right hemisphere
19.0
1816
Male, age 51, unknown
18.8
2825
Male, age 18, unknown
18.5
2667
Female, age 75, unknown
17.9
2224
Female, age 72, unknown
16.7
2273
Male, age 74, both hemispheres
11.8
2407
Male, age 75, both hemispheres
10.8
Red nucleus nTPM: 24.4
2588
Male, age 74, left hemisphere
29.7
2227
Male, age 72, unknown
29.1
1904
Male, age 53, unknown
28.1
2769
Male, age 72, unknown
25.5
2503
Female, age 72, unknown
23.8
1821
Female, age 72, unknown
23.7
1954
Female, age 42, unknown
23.6
2584
Male, age 75, left hemisphere
23.3
2823
Male, age 76, right hemisphere
23.3
1865
Male, age 51, unknown
23.2
2725
Female, age 75, unknown
19.7
2785
Male, age 18, unknown
19.6
Substantia nigra nTPM: 17.0
2665
Male, age 74, both hemispheres
22.8
1889
Female, age 72, unknown
20.7
2583
Male, age 75, right hemisphere
17.9
2699
Male, age 18, unknown
17.8
1851
Male, age 51, unknown
16.8
1916
Female, age 42, unknown
16.5
2590
Female, age 75, unknown
15.8
1941
Male, age 53, unknown
15.6
2409
Female, age 72, unknown
13.4
2241
Male, age 72, unknown
12.4
Superior colliculus nTPM: 19.2
2668
Female, age 75, unknown
23.8
1895
Male, age 76, right hemisphere
21.9
1839
Male, age 51, unknown
21.5
2087
Female, age 72, unknown
20.3
1913
Female, age 42, unknown
19.1
1995
Male, age 72, unknown
17.4
2587
Male, age 74, left hemisphere
17.4
2664
Male, age 75, both hemispheres
17.2
2261
Male, age 18, unknown
17.0
1796
Male, age 53, unknown
16.9
Ventral tegmental area nTPM: 17.5
2410
Female, age 72, unknown
19.9
1942
Male, age 51, unknown
19.4
2021
Male, age 53, unknown
17.4
2223
Female, age 72, unknown
17.3
1915
Female, age 42, unknown
15.9
2218
Male, age 76, both hemispheres
15.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 12.2
Samples: 139
Max nTPM: 46.0
Min nTPM: 2.2
Std nTPM: 7.4
Median nTPM: 10.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
46.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
41.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
39.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
36.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
30.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
29.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
28.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
28.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
26.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
25.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
24.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
23.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
21.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
19.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
19.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
18.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
18.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
18.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
18.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
18.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
17.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
17.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
17.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
17.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
16.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
16.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
16.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
16.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
16.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
15.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
15.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
14.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
14.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
14.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
14.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
13.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
13.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
13.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
13.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
13.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
13.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
13.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
13.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
13.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
13.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
12.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
12.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
12.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
12.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
12.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
12.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
12.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
11.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
11.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
11.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
11.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
11.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
11.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
11.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
11.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
11.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
11.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
10.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
10.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
10.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
10.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
10.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
10.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
10.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
10.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
10.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
10.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
10.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
10.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
10.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
10.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
9.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
9.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
9.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
9.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
9.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
9.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
9.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
9.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
8.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
8.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
8.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
8.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
8.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
8.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
8.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
8.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
8.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
8.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
8.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
8.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
8.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
8.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
8.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
7.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
7.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
7.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
7.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
7.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
7.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
7.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
7.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
7.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
7.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
7.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
7.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
7.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
6.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
6.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
6.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
6.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
5.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
5.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
5.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
5.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
5.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
5.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
5.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
5.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
5.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
5.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
5.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
5.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
5.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
5.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
4.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
4.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
4.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
3.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
3.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
3.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
2.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
2.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 9.4
Samples: 4
Max nTPM: 9.7
Min nTPM: 8.9
Sample A
Male
9.7
Sample B
Male
8.9
Sample C
Female
9.3
Sample D
Female
9.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.