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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
17.0
nTPM
HPA Brain:
122.7
nTPM
GTEx:
17.0
nTPM
FANTOM5:
16.0
Scaled Tags Per Million
Pig:
105.1
nTPM
Mouse:
148.5
nTPM
Allen mouse:
7.8
Expression energy
HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody CAB018364
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
122.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 63.7
2148
Female, age 91, left hemisphere
92.6
2621
Female, age 67, right hemisphere
75.1
2529
Female, age 94, left hemisphere
68.6
1898
Male, age 80, left hemisphere
63.4
1911
Female, age 85, right hemisphere
47.6
1855
Male, age 76, left hemisphere
34.7
Dentate gyrus nTPM: 79.4
2531
Female, age 67, both hemispheres
143.2
1927
Female, age 91, both hemispheres
112.2
2528
Male, age 74, both hemispheres
81.0
2246
Female, age 85, both hemispheres
58.6
2530
Female, age 94, left hemisphere
43.3
2010
Male, age 76, both hemispheres
37.9
Entorhinal gyrus nTPM: 122.7
2613
Female, age 94, left hemisphere
174.1
1787
Male, age 76, left hemisphere
145.3
1938
Female, age 85, left hemisphere
141.0
2764
Male, age 80, right hemisphere
128.2
2686
Male, age 75, right hemisphere
85.0
2117
Female, age 91, right hemisphere
62.6
Hippocampus, CA1 nTPM: 62.9
2749
Male, age 80, left hemisphere
82.6
2045
Male, age 76, both hemispheres
75.7
2527
Male, age 74, both hemispheres
62.4
1873
Female, age 85, both hemispheres
53.5
2082
Female, age 91, right hemisphere
40.2
Hippocampus, CA2 nTPM: 56.3
1892
Male, age 76, both hemispheres
86.7
2437
Female, age 94, left hemisphere
73.4
1963
Male, age 80, left hemisphere
52.7
2113
Female, age 91, right hemisphere
45.7
1940
Female, age 85, left hemisphere
41.9
2249
Male, age 74, both hemispheres
37.3
Hippocampus, CA3 nTPM: 95.0
2620
Female, age 94, left hemisphere
175.4
2861
Female, age 67, both hemispheres
129.2
1867
Male, age 76, both hemispheres
86.4
2137
Male, age 80, left hemisphere
73.8
1891
Female, age 85, both hemispheres
67.7
2436
Male, age 74, both hemispheres
37.3
Parahippocampal cortex nTPM: 104.1
1990
Female, age 91, right hemisphere
157.9
2692
Male, age 74, both hemispheres
138.0
1850
Male, age 80, both hemispheres
108.1
2250
Female, age 67, right hemisphere
103.5
2245
Female, age 91, both hemispheres
99.6
2693
Female, age 94, both hemispheres
99.0
2622
Female, age 67, right hemisphere
97.7
1933
Female, age 85, both hemispheres
95.9
2532
Female, age 72, left hemisphere
85.2
2018
Male, age 76, both hemispheres
55.7
Perirhinal gyrus nTPM: 121.8
1847
Female, age 91, left hemisphere
199.0
2521
Female, age 94, right hemisphere
121.1
2848
Male, age 76, right hemisphere
97.3
1794
Male, age 80, right hemisphere
95.9
1841
Female, age 85, right hemisphere
95.6
Subiculum nTPM: 76.2
2619
Male, age 74, both hemispheres
110.1
1977
Female, age 85, both hemispheres
109.2
2438
Female, age 94, left hemisphere
81.2
1901
Male, age 80, both hemispheres
63.9
2729
Female, age 91, right hemisphere
62.4
2042
Male, age 76, both hemispheres
30.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 17.0
Samples: 197
Max nTPM: 68.5
Min nTPM: 1.3
Std nTPM: 12.5
Median nTPM: 14.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
68.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
66.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
58.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
57.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
57.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
53.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
46.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
45.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
44.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
43.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
42.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
40.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
39.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
36.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
35.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
34.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
34.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
33.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
33.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
33.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
33.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
32.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
32.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
31.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
31.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
30.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
29.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
29.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
29.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
28.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
28.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
27.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
27.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
27.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
27.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
27.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
26.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
26.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
26.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
25.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
25.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
25.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
25.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
24.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
24.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
24.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
23.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
23.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
22.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
22.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
22.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
21.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
21.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
21.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
20.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
20.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
19.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
19.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
19.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
19.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
19.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
18.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
18.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
18.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
18.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
18.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
18.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
17.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
17.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
17.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
17.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
16.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
16.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
16.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
16.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
16.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
16.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
15.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
15.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
15.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
15.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
15.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
15.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
15.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
15.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
15.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
15.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
14.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
14.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
14.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
14.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
14.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
14.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
14.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
14.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
14.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
14.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
14.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
14.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
14.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
14.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
13.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
12.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
12.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
12.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
12.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
12.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
12.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
12.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
12.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
12.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
11.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
11.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
11.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
11.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
11.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
11.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
11.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
11.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
11.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
10.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
10.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
10.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
10.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
10.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
10.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
10.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
10.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
10.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
9.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
9.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
9.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
9.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
9.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
9.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
9.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
9.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
9.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
9.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
9.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
8.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
8.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
8.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
8.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
8.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
8.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
7.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
7.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
7.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
7.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
7.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
7.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
7.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
7.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
7.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
7.1
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
7.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
6.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
6.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
6.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
6.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
6.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
6.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
6.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
6.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
6.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
5.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
5.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
5.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
5.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
5.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
5.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
5.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
5.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
5.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
5.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
5.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
5.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
5.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
4.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
4.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
4.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
4.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
4.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
4.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
4.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
4.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
3.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
3.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
3.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
3.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
3.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
2.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
2.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
2.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
1.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
1.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
148.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 138.2
Samples: 4
Max nTPM: 155.2
Min nTPM: 128.2
Sample A
Male
155.2
Sample B
Male
135.3
Sample C
Female
134.0
Sample D
Female
128.2
Hippocampal formation nTPM: 148.5
Samples: 4
Max nTPM: 191.5
Min nTPM: 117.8
Sample A
Male
123.1
Sample B
Male
161.4
Sample C
Female
191.5
Sample D
Female
117.8
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.