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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.5
Sample id
Sample description
nTPM
Amygdala nTPM: 12.2
2814
Male, age 76, right hemisphere
13.4
2517
Female, age 94, left hemisphere
12.9
1987
Female, age 91, left hemisphere
12.2
2514
Male, age 75, right hemisphere
12.1
2695
Female, age 67, right hemisphere
10.4
Basal amygdala nTPM: 12.4
2827
Female, age 67, right hemisphere
13.6
2609
Male, age 75, right hemisphere
13.0
2685
Female, age 94, left hemisphere
12.3
1955
Male, age 76, both hemispheres
12.2
2110
Male, age 80, left hemisphere
11.6
2243
Female, age 91, right hemisphere
11.4
Central amygdala nTPM: 13.5
1905
Male, age 76, both hemispheres
13.9
2701
Female, age 91, right hemisphere
13.9
2515
Male, age 75, right hemisphere
13.7
2826
Female, age 94, left hemisphere
13.6
2239
Male, age 80, left hemisphere
12.3
Corticomedial amygdala nTPM: 12.1
2428
Male, age 75, right hemisphere
13.5
2535
Female, age 67, right hemisphere
12.5
2242
Female, age 91, right hemisphere
12.3
2429
Female, age 94, left hemisphere
11.9
2240
Male, age 76, both hemispheres
11.4
2829
Male, age 80, left hemisphere
11.2
Lateral amygdala nTPM: 13.3
2534
Female, age 94, left hemisphere
14.4
2830
Female, age 67, right hemisphere
14.2
2516
Male, age 75, right hemisphere
13.7
2255
Female, age 91, right hemisphere
13.1
1883
Male, age 76, both hemispheres
12.3
2256
Male, age 80, left hemisphere
12.1
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
8.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 8.4
Samples: 152
Max nTPM: 18.7
Min nTPM: 3.8
Std nTPM: 1.9
Median nTPM: 8.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
18.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
13.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
13.0
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
12.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
12.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
12.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
12.3
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
12.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
11.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
11.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
11.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
11.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
11.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
11.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
10.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
10.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
10.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
10.8
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
10.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
10.5
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
10.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
10.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
10.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
10.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
10.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
10.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
10.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
10.0
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
9.8
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
9.7
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
9.7
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
9.6
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
9.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
9.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
9.5
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
9.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
9.5
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
9.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
9.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
9.4
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
9.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
9.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
9.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
9.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
9.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
9.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
9.2
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
9.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
9.2
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
9.1
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
9.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
9.1
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
9.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
9.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
8.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
8.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
8.8
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
8.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
8.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
8.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
8.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
8.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
8.5
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
8.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
8.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
8.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
8.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
8.4
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
8.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
8.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
8.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
8.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
8.3
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
8.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
8.2
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
8.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
8.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
8.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
8.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
8.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
8.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
8.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
7.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
7.9
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
7.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
7.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
7.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
7.8
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
7.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
7.8
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
7.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
7.7
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
7.6
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
7.6
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
7.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
7.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
7.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
7.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
7.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
7.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
7.5
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
7.5
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
7.4
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
7.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
7.4
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
7.4
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
7.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
7.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
7.3
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
7.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
7.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
7.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
7.1
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
7.1
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
7.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
7.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
7.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
7.0
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
7.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
7.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
7.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
6.9
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
6.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
6.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
6.9
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
6.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
6.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
6.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
6.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
6.8
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
6.7
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
6.7
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
6.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
6.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
6.4
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
6.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
6.3
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
6.3
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
6.2
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
6.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
5.9
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
5.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
5.8
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
5.7
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
5.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
5.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
5.4
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
5.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
5.2
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
5.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
5.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
3.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
175.7
Mouse sample
Sample description
nTPM
Amygdala nTPM: 175.7
Samples: 4
Max nTPM: 179.3
Min nTPM: 173.2
Sample A
Male
179.3
Sample B
Male
173.2
Sample C
Female
176.0
Sample D
Female
174.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.