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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.6
nTPM
Monaco:
176.1
nTPM
Schmiedel:
926.1
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.6
HPA sample
nTPM
gdT-cell nTPM: 0.5
Samples: 6
Max nTPM: 2.0
Min nTPM: 0.0
P10809_1007
0.2
P10809_1022
2.0
P10809_1041
0.0
P10809_1060
0.2
P10809_1077
0.8
P10809_1098
0.0
MAIT T-cell nTPM: 0.5
Samples: 6
Max nTPM: 2.5
Min nTPM: 0.0
P10809_1006
0.0
P10809_1024
2.5
P10809_1043
0.0
P10809_1062
0.6
P10809_1083
0.0
P10809_1097
0.0
Memory CD4 T-cell nTPM: 5.9
Samples: 6
Max nTPM: 8.6
Min nTPM: 3.9
P10809_1014
3.9
P10809_1026
8.1
P10809_1045
6.0
P10809_1064
4.8
P10809_1086
8.6
P10809_1113
4.1
Memory CD8 T-cell nTPM: 0.8
Samples: 5
Max nTPM: 1.2
Min nTPM: 0.0
P10809_1012
0.9
P10809_1027
1.2
P10809_1046
0.6
P10809_1065
1.1
P10809_1111
0.0
Naive CD4 T-cell nTPM: 1.4
Samples: 6
Max nTPM: 4.0
Min nTPM: 0.1
P10809_1015
0.6
P10809_1030
4.0
P10809_1049
0.7
P10809_1068
0.4
P10809_1085
2.8
P10809_1112
0.1
Naive CD8 T-cell nTPM: 0.3
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1016
0.6
P10809_1031
0.0
P10809_1050
0.5
P10809_1069
0.0
P10809_1087
0.6
P10809_1110
0.0
T-reg nTPM: 42.6
Samples: 6
Max nTPM: 62.7
Min nTPM: 25.0
P10809_1018
31.8
P10809_1037
62.7
P10809_1056
31.2
P10809_1075
25.0
P10809_1094
60.7
P10809_1106
44.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
176.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 15.5
Samples: 4
Max nTPM: 32.5
Min nTPM: 7.0
RHH5202_R3573
32.5
RHH5230_R3602
8.4
RHH5259_R3631
13.9
RHH5288_R3660
7.0
Effector memory CD8 T-cell nTPM: 26.6
Samples: 4
Max nTPM: 47.4
Min nTPM: 0.0
RHH5203_R3574
47.4
RHH5231_R3603
36.2
RHH5260_R3632
22.6
RHH5289_R3661
0.0
MAIT T-cell nTPM: 4.8
Samples: 4
Max nTPM: 14.3
Min nTPM: 0.0
RHH5233_R3605
3.1
RHH5205_R3576
14.3
RHH5262_R3634
1.7
RHH5297_R3663
0.0
Memory CD4 T-cell TFH nTPM: 64.2
Samples: 4
Max nTPM: 96.0
Min nTPM: 25.5
RHH5300_R3666
25.5
RHH5236_R3608
59.0
RHH5265_R3637
76.3
RHH5208_R3579
96.0
Memory CD4 T-cell Th1 nTPM: 45.6
Samples: 4
Max nTPM: 79.6
Min nTPM: 6.8
RHH5210_R3581
48.9
RHH5302_R3668
6.8
RHH5238_R3610
79.6
RHH5267_R3639
46.9
Memory CD4 T-cell Th1/Th17 nTPM: 33.5
Samples: 4
Max nTPM: 79.2
Min nTPM: 3.2
RHH5303_R3669
3.2
RHH5211_R3582
79.2
RHH5239_R3611
23.9
RHH5268_R3640
27.7
Memory CD4 T-cell Th17 nTPM: 46.8
Samples: 4
Max nTPM: 67.7
Min nTPM: 6.4
RHH5304_R3670
6.4
RHH5212_R3583
57.3
RHH5240_R3612
55.8
RHH5269_R3641
67.7
Memory CD4 T-cell Th2 nTPM: 17.4
Samples: 4
Max nTPM: 33.1
Min nTPM: 1.9
RHH5305_R3671
1.9
RHH5213_R3584
33.1
RHH5241_R3613
16.0
RHH5270_R3642
18.6
Naive CD4 T-cell nTPM: 19.7
Samples: 4
Max nTPM: 32.5
Min nTPM: 1.8
RHH5306_R3672
1.8
RHH5214_R3585
30.1
RHH5242_R3614
14.5
RHH5271_R3643
32.5
Naive CD8 T-cell nTPM: 8.3
Samples: 4
Max nTPM: 22.2
Min nTPM: 0.0
RHH5201_R3572
22.2
RHH5229_R3601
8.1
RHH5258_R3630
3.0
RHH5287_R3659
0.0
Non-Vd2 gdTCR nTPM: 16.1
Samples: 4
Max nTPM: 64.2
Min nTPM: 0.0
RHH5235_R3607
0.0
RHH5264_R3636
0.3
RHH5207_R3578
64.2
RHH5299_R3665
0.0
T-reg nTPM: 176.2
Samples: 4
Max nTPM: 240.3
Min nTPM: 68.7
RHH5301_R3667
68.7
RHH5237_R3609
240.3
RHH5266_R3638
177.2
RHH5209_R3580
218.4
Terminal effector memory CD4 T-cell nTPM: 29.6
Samples: 2
Max nTPM: 32.4
Min nTPM: 26.8
RHH5243_R3615
26.8
RHH5272_R3644
32.4
Terminal effector memory CD8 T-cell nTPM: 5.7
Samples: 4
Max nTPM: 10.5
Min nTPM: 0.4
RHH5232_R3604
10.5
RHH5204_R3575
7.5
RHH5261_R3633
4.2
RHH5296_R3662
0.4
Vd2 gdTCR nTPM: 4.6
Samples: 4
Max nTPM: 13.3
Min nTPM: 0.0
RHH5234_R3606
5.1
RHH5206_R3577
13.3
RHH5263_R3635
0.1
RHH5298_R3664
0.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.