MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.5 nTPM
HPA Brain:23.1 nTPM
GTEx:8.5 nTPM
FANTOM5:42.5 Scaled Tags Per Million
Pig:17.2 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 23.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.1
1830 Male, age 51, unknown 24.6
2411 Female, age 72, unknown 24.0
1833 Male, age 53, unknown 23.9
1870 Female, age 42, unknown 23.5
2219 Male, age 76, both hemispheres 20.3
2019 Male, age 18, unknown 20.1
1827 Male, age 72, unknown 19.6
2586 Male, age 75, left hemisphere 18.8
2828 Female, age 72, unknown 18.1
2666 Male, age 74, left hemisphere 17.5
Dorsal raphe nucleus
nTPM: 19.8
2750 Male, age 76, both hemispheres 24.3
2047 Male, age 72, unknown 20.2
2016 Female, age 72, unknown 19.2
1828 Male, age 53, unknown 18.4
2298 Female, age 72, unknown 16.8
Inferior colliculus
nTPM: 19.8
2849 Male, age 72, unknown 22.3
1848 Female, age 42, unknown 19.7
1890 Male, age 53, unknown 18.7
2097 Female, age 72, unknown 18.3
Median raphe nucleus
nTPM: 23.1
2220 Male, age 76, midline 23.1
Periaquaductal grey, anterior
nTPM: 17.4
2502 Female, age 75, unknown 19.2
1947 Male, age 18, unknown 17.6
1795 Male, age 51, unknown 15.3
Periaquaductal grey, dorsal
nTPM: 20.5
2850 Male, age 76, both hemispheres 22.6
2464 Female, age 72, unknown 21.1
1840 Male, age 53, unknown 20.0
1831 Male, age 72, unknown 18.2
Periaquaductal grey, lateral
nTPM: 19.2
2140 Male, age 76, both hemispheres 19.8
2053 Male, age 18, unknown 19.2
2272 Male, age 74, both hemispheres 18.5
Pretectal area
nTPM: 18.3
2825 Male, age 18, unknown 22.0
2316 Male, age 76, right hemisphere 21.3
2407 Male, age 75, both hemispheres 20.9
2224 Female, age 72, unknown 20.6
1815 Male, age 53, unknown 19.9
2273 Male, age 74, both hemispheres 17.7
1817 Female, age 42, unknown 17.4
2667 Female, age 75, unknown 16.9
2007 Male, age 72, unknown 15.7
1944 Female, age 72, unknown 14.7
1816 Male, age 51, unknown 14.6
Red nucleus
nTPM: 21.4
2823 Male, age 76, right hemisphere 24.7
1904 Male, age 53, unknown 22.3
1865 Male, age 51, unknown 22.2
2769 Male, age 72, unknown 22.0
1954 Female, age 42, unknown 21.3
2503 Female, age 72, unknown 21.3
1821 Female, age 72, unknown 21.2
2584 Male, age 75, left hemisphere 21.2
2227 Male, age 72, unknown 21.0
2588 Male, age 74, left hemisphere 21.0
2725 Female, age 75, unknown 20.1
2785 Male, age 18, unknown 18.7
Substantia nigra
nTPM: 18.1
2241 Male, age 72, unknown 20.6
2590 Female, age 75, unknown 19.3
2409 Female, age 72, unknown 19.1
1941 Male, age 53, unknown 19.0
1851 Male, age 51, unknown 18.3
2699 Male, age 18, unknown 17.9
1889 Female, age 72, unknown 17.2
2583 Male, age 75, right hemisphere 17.2
2665 Male, age 74, both hemispheres 17.2
1916 Female, age 42, unknown 15.1
Superior colliculus
nTPM: 19.5
1839 Male, age 51, unknown 22.2
1913 Female, age 42, unknown 22.2
1895 Male, age 76, right hemisphere 21.7
2587 Male, age 74, left hemisphere 20.7
1995 Male, age 72, unknown 19.9
2664 Male, age 75, both hemispheres 19.1
2261 Male, age 18, unknown 18.7
2668 Female, age 75, unknown 18.7
2087 Female, age 72, unknown 16.2
1796 Male, age 53, unknown 15.8
Ventral tegmental area
nTPM: 20.1
2223 Female, age 72, unknown 23.7
2021 Male, age 53, unknown 20.5
1942 Male, age 51, unknown 19.9
2218 Male, age 76, both hemispheres 19.8
2410 Female, age 72, unknown 19.2
1915 Female, age 42, unknown 17.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.5
Samples: 139

Max nTPM: 15.9
Min nTPM: 2.1
Std nTPM: 2.3
Median nTPM: 8.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 15.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 15.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 14.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 13.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 13.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 13.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 12.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 12.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 12.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 12.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.5
FF:10158-103A5 76 years, female 42.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.4
Samples: 4

Max nTPM: 18.6
Min nTPM: 11.5
Sample A Female 11.5
Sample B Female 18.6
Sample C Male 11.9
Sample D Male 11.5
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 25.4
Min nTPM: 6.8
Sample A Female 11.9
Sample B Female 25.4
Sample C Male 6.8
Sample D Male 12.5
Periaqueductal gray
nTPM: 17.2
Samples: 3

Max nTPM: 22.7
Min nTPM: 12.4
Sample B Female 22.7
Sample C Male 12.4
Sample D Male 16.4
Superior colliculi
nTPM: 13.2
Samples: 4

Max nTPM: 22.2
Min nTPM: 7.5
Sample A Female 7.5
Sample B Female 22.2
Sample C Male 7.5
Sample D Male 15.5

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