We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
13.5
nTPM
HPA Brain:
52.0
nTPM
GTEx:
13.5
nTPM
FANTOM5:
17.0
Scaled Tags Per Million
Pig:
29.2
nTPM
Mouse:
43.1
nTPM
Allen mouse:
10.2
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA062660
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 40.8
1898
Male, age 80, left hemisphere
55.7
2148
Female, age 91, left hemisphere
47.2
1855
Male, age 76, left hemisphere
44.9
2621
Female, age 67, right hemisphere
42.3
1911
Female, age 85, right hemisphere
32.4
2529
Female, age 94, left hemisphere
22.4
Dentate gyrus nTPM: 43.4
1927
Female, age 91, both hemispheres
57.0
2010
Male, age 76, both hemispheres
53.0
2531
Female, age 67, both hemispheres
41.4
2246
Female, age 85, both hemispheres
40.7
2528
Male, age 74, both hemispheres
34.3
2530
Female, age 94, left hemisphere
34.1
Entorhinal gyrus nTPM: 35.0
1787
Male, age 76, left hemisphere
45.0
1938
Female, age 85, left hemisphere
40.4
2613
Female, age 94, left hemisphere
37.8
2764
Male, age 80, right hemisphere
35.7
2686
Male, age 75, right hemisphere
34.5
2117
Female, age 91, right hemisphere
16.5
Hippocampus, CA1 nTPM: 52.0
2749
Male, age 80, left hemisphere
82.4
1873
Female, age 85, both hemispheres
51.2
2045
Male, age 76, both hemispheres
49.2
2527
Male, age 74, both hemispheres
44.2
2082
Female, age 91, right hemisphere
32.9
Hippocampus, CA2 nTPM: 37.2
1963
Male, age 80, left hemisphere
56.3
1892
Male, age 76, both hemispheres
46.7
2249
Male, age 74, both hemispheres
40.8
2113
Female, age 91, right hemisphere
32.2
2437
Female, age 94, left hemisphere
27.8
1940
Female, age 85, left hemisphere
19.4
Hippocampus, CA3 nTPM: 45.3
2137
Male, age 80, left hemisphere
64.9
2861
Female, age 67, both hemispheres
57.2
2620
Female, age 94, left hemisphere
50.3
1867
Male, age 76, both hemispheres
37.0
2436
Male, age 74, both hemispheres
36.8
1891
Female, age 85, both hemispheres
25.7
Parahippocampal cortex nTPM: 35.5
2245
Female, age 91, both hemispheres
53.1
1990
Female, age 91, right hemisphere
45.3
2250
Female, age 67, right hemisphere
45.1
1933
Female, age 85, both hemispheres
41.7
2018
Male, age 76, both hemispheres
34.3
2692
Male, age 74, both hemispheres
30.3
2622
Female, age 67, right hemisphere
29.6
2693
Female, age 94, both hemispheres
27.9
1850
Male, age 80, both hemispheres
25.2
2532
Female, age 72, left hemisphere
22.7
Perirhinal gyrus nTPM: 38.4
1847
Female, age 91, left hemisphere
56.9
2521
Female, age 94, right hemisphere
45.9
1794
Male, age 80, right hemisphere
31.9
2848
Male, age 76, right hemisphere
31.2
1841
Female, age 85, right hemisphere
26.4
Subiculum nTPM: 31.0
1977
Female, age 85, both hemispheres
47.7
2619
Male, age 74, both hemispheres
34.4
1901
Male, age 80, both hemispheres
31.3
2729
Female, age 91, right hemisphere
29.2
2042
Male, age 76, both hemispheres
29.1
2438
Female, age 94, left hemisphere
14.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 13.5
Samples: 197
Max nTPM: 56.2
Min nTPM: 0.5
Std nTPM: 10.8
Median nTPM: 10.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
56.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
47.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
46.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
41.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
40.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
40.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
40.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
38.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
37.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
36.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
35.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
35.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
32.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
32.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
32.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
31.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
30.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
30.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
30.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
30.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
30.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
29.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
29.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
28.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
27.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
27.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
26.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
26.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
26.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
25.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
24.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
23.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
23.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
23.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
22.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
22.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
22.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
22.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
21.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
21.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
21.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
21.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
20.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
20.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
20.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
19.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
19.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
19.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
19.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
18.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
18.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
18.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
18.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
17.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
17.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
17.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
17.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
17.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
17.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
16.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
16.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
16.3
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
16.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
15.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
15.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
15.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
15.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
15.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
15.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
14.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
14.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
14.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
14.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
14.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
13.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
13.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
13.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
13.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
13.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
12.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
12.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
12.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
12.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
12.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
12.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
11.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
11.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
11.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
11.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
11.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
11.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
11.1
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
10.9
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
10.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
10.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
10.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
10.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
10.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
10.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
10.1
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
10.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
10.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
10.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
10.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
9.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
9.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
9.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
9.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
9.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
8.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
8.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
8.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
8.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
8.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
8.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
8.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
8.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
8.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
8.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
8.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
8.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
8.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
8.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
7.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
7.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
7.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
7.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
7.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
7.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
7.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
7.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
7.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
7.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
7.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
6.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
6.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
6.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
6.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
6.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
6.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
6.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
5.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
5.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
5.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
5.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
5.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
5.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
5.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
5.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
4.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
4.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
4.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
4.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
4.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
4.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
4.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
4.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
4.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
4.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
4.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
3.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
3.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
3.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
3.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
3.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
3.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
3.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
3.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
3.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
3.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
3.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
3.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
3.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
2.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
2.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
2.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
2.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
2.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
2.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
2.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
2.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
2.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
2.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
2.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
2.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
2.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
1.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
1.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
1.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
1.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
1.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
1.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
1.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
1.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
0.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
0.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
0.5
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
43.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 28.0
Samples: 4
Max nTPM: 39.6
Min nTPM: 21.6
Sample A
Male
21.6
Sample B
Male
22.4
Sample C
Female
28.3
Sample D
Female
39.6
Hippocampal formation nTPM: 43.1
Samples: 4
Max nTPM: 47.1
Min nTPM: 33.8
Sample A
Male
33.8
Sample B
Male
45.1
Sample C
Female
47.1
Sample D
Female
46.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.