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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
32.3
nTPM
HPA Brain:
29.6
nTPM
GTEx:
32.3
nTPM
FANTOM5:
18.7
Scaled Tags Per Million
Pig:
8.1
nTPM
Mouse:
17.0
nTPM
Allen mouse:
1.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 23.8
2586
Male, age 75, left hemisphere
38.8
2828
Female, age 72, unknown
28.5
1827
Male, age 72, unknown
26.1
2666
Male, age 74, left hemisphere
23.2
2019
Male, age 18, unknown
21.3
2411
Female, age 72, unknown
21.3
1830
Male, age 51, unknown
20.7
1833
Male, age 53, unknown
20.3
1870
Female, age 42, unknown
19.8
2219
Male, age 76, both hemispheres
18.4
Dorsal raphe nucleus nTPM: 22.1
2298
Female, age 72, unknown
25.2
2016
Female, age 72, unknown
22.8
2047
Male, age 72, unknown
21.4
1828
Male, age 53, unknown
20.8
2750
Male, age 76, both hemispheres
20.3
Inferior colliculus nTPM: 22.2
2097
Female, age 72, unknown
24.4
1848
Female, age 42, unknown
21.5
1890
Male, age 53, unknown
21.4
2849
Male, age 72, unknown
21.3
Median raphe nucleus nTPM: 19.0
2220
Male, age 76, midline
19.0
Periaquaductal grey, anterior nTPM: 29.6
2502
Female, age 75, unknown
33.1
1795
Male, age 51, unknown
29.5
1947
Male, age 18, unknown
26.2
Periaquaductal grey, dorsal nTPM: 21.3
1840
Male, age 53, unknown
24.2
2464
Female, age 72, unknown
23.0
1831
Male, age 72, unknown
20.9
2850
Male, age 76, both hemispheres
17.1
Periaquaductal grey, lateral nTPM: 21.3
2053
Male, age 18, unknown
22.5
2272
Male, age 74, both hemispheres
22.1
2140
Male, age 76, both hemispheres
19.1
Pretectal area nTPM: 24.0
1816
Male, age 51, unknown
30.1
1944
Female, age 72, unknown
28.8
2007
Male, age 72, unknown
24.9
1817
Female, age 42, unknown
23.8
2407
Male, age 75, both hemispheres
23.8
2825
Male, age 18, unknown
23.4
2316
Male, age 76, right hemisphere
23.0
2667
Female, age 75, unknown
22.3
2273
Male, age 74, both hemispheres
22.2
1815
Male, age 53, unknown
21.4
2224
Female, age 72, unknown
20.0
Red nucleus nTPM: 23.9
2584
Male, age 75, left hemisphere
30.6
2588
Male, age 74, left hemisphere
29.6
2503
Female, age 72, unknown
27.9
2227
Male, age 72, unknown
25.4
2769
Male, age 72, unknown
25.1
2785
Male, age 18, unknown
24.4
1904
Male, age 53, unknown
23.4
1954
Female, age 42, unknown
21.2
1865
Male, age 51, unknown
21.0
1821
Female, age 72, unknown
19.9
2823
Male, age 76, right hemisphere
19.8
2725
Female, age 75, unknown
18.6
Substantia nigra nTPM: 21.9
1916
Female, age 42, unknown
28.5
2583
Male, age 75, right hemisphere
27.6
2590
Female, age 75, unknown
24.8
2665
Male, age 74, both hemispheres
23.7
1851
Male, age 51, unknown
21.8
1889
Female, age 72, unknown
21.8
1941
Male, age 53, unknown
21.1
2699
Male, age 18, unknown
20.1
2241
Male, age 72, unknown
17.6
2409
Female, age 72, unknown
12.4
Superior colliculus nTPM: 24.2
2664
Male, age 75, both hemispheres
31.9
2261
Male, age 18, unknown
29.1
1796
Male, age 53, unknown
28.7
2087
Female, age 72, unknown
26.1
2668
Female, age 75, unknown
24.7
1995
Male, age 72, unknown
23.3
1839
Male, age 51, unknown
21.8
1913
Female, age 42, unknown
21.5
1895
Male, age 76, right hemisphere
17.5
2587
Male, age 74, left hemisphere
17.5
Ventral tegmental area nTPM: 21.4
1915
Female, age 42, unknown
25.8
1942
Male, age 51, unknown
22.7
2021
Male, age 53, unknown
22.1
2410
Female, age 72, unknown
19.8
2223
Female, age 72, unknown
19.2
2218
Male, age 76, both hemispheres
18.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 32.3
Samples: 139
Max nTPM: 69.1
Min nTPM: 14.9
Std nTPM: 8.4
Median nTPM: 31.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
69.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
55.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
50.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
48.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
48.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
47.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
47.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
46.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
45.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
45.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
44.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
42.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
41.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
41.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
41.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
41.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
41.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
41.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
40.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
40.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
39.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
39.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
39.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
39.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
39.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
39.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
38.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
38.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
38.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
38.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
38.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
38.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
38.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
38.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
38.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
38.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
38.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
37.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
37.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
37.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
37.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
37.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
37.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
36.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
36.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
36.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
36.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
35.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
35.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
35.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
35.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
34.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
34.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
34.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
34.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
34.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
33.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
33.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
33.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
32.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
32.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
32.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
31.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
31.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
31.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
31.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
31.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
31.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
31.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
31.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
31.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
31.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
31.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
30.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
30.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
30.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
30.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
30.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
29.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
29.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
29.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
29.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
29.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
29.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
29.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
29.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
28.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
28.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
28.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
28.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
28.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
27.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
27.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
27.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
27.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
27.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
27.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
27.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
26.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
26.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
26.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
26.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
26.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
26.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
26.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
26.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
26.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
26.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
26.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
25.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
25.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
25.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
25.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
24.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
24.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
24.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
24.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
24.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
23.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
23.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
23.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
23.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
23.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
23.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
22.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
22.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
21.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
21.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
21.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
20.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
20.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
20.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
20.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
19.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
19.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
17.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
17.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
16.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
14.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 17.0
Samples: 4
Max nTPM: 19.1
Min nTPM: 14.8
Sample A
Male
19.1
Sample B
Male
17.1
Sample C
Female
14.8
Sample D
Female
17.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.