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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
245.6
nTPM
HPA Brain:
137.8
nTPM
GTEx:
245.6
nTPM
FANTOM5:
55.8
Scaled Tags Per Million
Pig:
72.4
nTPM
Mouse:
50.4
nTPM
Allen mouse:
3.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA061691
Glial cells
Low
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
137.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 128.4
2529
Female, age 94, left hemisphere
160.1
1911
Female, age 85, right hemisphere
134.5
1855
Male, age 76, left hemisphere
126.3
2621
Female, age 67, right hemisphere
122.5
2148
Female, age 91, left hemisphere
114.7
1898
Male, age 80, left hemisphere
112.4
Dentate gyrus nTPM: 137.8
2530
Female, age 94, left hemisphere
213.4
2528
Male, age 74, both hemispheres
178.5
2010
Male, age 76, both hemispheres
159.0
2246
Female, age 85, both hemispheres
122.2
2531
Female, age 67, both hemispheres
88.5
1927
Female, age 91, both hemispheres
65.2
Entorhinal gyrus nTPM: 94.8
2117
Female, age 91, right hemisphere
170.0
2764
Male, age 80, right hemisphere
111.7
1787
Male, age 76, left hemisphere
88.9
1938
Female, age 85, left hemisphere
72.3
2686
Male, age 75, right hemisphere
72.0
2613
Female, age 94, left hemisphere
54.2
Hippocampus, CA1 nTPM: 113.3
2082
Female, age 91, right hemisphere
189.1
2527
Male, age 74, both hemispheres
128.4
1873
Female, age 85, both hemispheres
102.8
2045
Male, age 76, both hemispheres
79.9
2749
Male, age 80, left hemisphere
66.5
Hippocampus, CA2 nTPM: 132.3
2249
Male, age 74, both hemispheres
235.0
1940
Female, age 85, left hemisphere
167.7
2113
Female, age 91, right hemisphere
119.0
1963
Male, age 80, left hemisphere
110.7
2437
Female, age 94, left hemisphere
109.2
1892
Male, age 76, both hemispheres
52.3
Hippocampus, CA3 nTPM: 90.4
2620
Female, age 94, left hemisphere
129.8
2436
Male, age 74, both hemispheres
112.1
1891
Female, age 85, both hemispheres
92.3
2861
Female, age 67, both hemispheres
78.9
1867
Male, age 76, both hemispheres
70.2
2137
Male, age 80, left hemisphere
59.4
Parahippocampal cortex nTPM: 71.7
2018
Male, age 76, both hemispheres
94.8
2532
Female, age 72, left hemisphere
90.9
2692
Male, age 74, both hemispheres
90.8
1933
Female, age 85, both hemispheres
80.7
1850
Male, age 80, both hemispheres
75.5
2245
Female, age 91, both hemispheres
73.2
1990
Female, age 91, right hemisphere
65.4
2622
Female, age 67, right hemisphere
59.1
2693
Female, age 94, both hemispheres
47.2
2250
Female, age 67, right hemisphere
39.5
Perirhinal gyrus nTPM: 61.7
1794
Male, age 80, right hemisphere
85.4
2848
Male, age 76, right hemisphere
70.1
2521
Female, age 94, right hemisphere
54.5
1847
Female, age 91, left hemisphere
51.0
1841
Female, age 85, right hemisphere
47.8
Subiculum nTPM: 111.4
2042
Male, age 76, both hemispheres
159.7
2729
Female, age 91, right hemisphere
128.5
2619
Male, age 74, both hemispheres
116.0
1977
Female, age 85, both hemispheres
102.9
1901
Male, age 80, both hemispheres
94.1
2438
Female, age 94, left hemisphere
67.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
245.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 245.6
Samples: 197
Max nTPM: 898.9
Min nTPM: 34.4
Std nTPM: 144.4
Median nTPM: 207.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
898.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
730.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
685.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
671.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
623.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
590.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
582.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
580.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
580.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
533.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
518.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
518.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
511.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
486.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
473.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
466.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
451.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
449.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
431.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
428.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
417.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
414.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
414.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
409.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
407.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
407.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
398.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
398.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
397.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
396.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
394.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
394.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
393.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
391.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
391.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
380.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
372.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
366.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
358.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
358.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
347.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
347.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
344.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
344.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
340.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
334.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
331.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
329.1
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
325.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
321.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
319.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
300.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
295.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
294.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
286.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
286.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
282.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
280.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
279.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
278.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
277.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
275.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
272.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
269.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
269.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
261.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
259.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
252.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
251.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
251.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
250.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
250.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
249.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
249.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
246.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
244.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
243.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
242.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
242.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
241.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
241.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
240.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
238.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
233.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
231.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
227.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
227.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
226.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
225.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
221.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
221.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
221.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
220.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
218.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
217.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
215.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
211.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
209.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
207.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
206.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
204.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
204.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
203.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
202.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
202.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
202.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
202.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
200.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
199.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
198.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
198.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
197.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
197.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
196.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
196.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
194.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
192.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
191.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
190.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
186.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
180.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
176.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
175.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
173.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
172.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
172.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
172.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
168.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
168.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
168.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
166.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
163.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
162.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
162.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
160.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
158.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
154.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
152.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
151.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
150.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
150.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
150.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
149.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
148.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
148.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
148.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
146.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
145.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
144.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
144.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
143.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
142.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
142.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
140.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
139.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
135.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
132.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
131.4
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
129.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
129.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
123.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
123.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
122.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
121.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
120.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
117.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
117.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
114.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
112.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
110.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
105.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
104.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
103.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
101.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
100.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
100.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
98.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
96.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
90.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
88.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
88.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
88.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
88.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
86.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
85.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
83.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
81.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
80.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
76.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
71.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
64.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
60.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
54.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
52.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
46.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
39.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
34.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
50.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 34.8
Samples: 4
Max nTPM: 38.1
Min nTPM: 27.7
Sample A
Male
35.8
Sample B
Male
37.7
Sample C
Female
38.1
Sample D
Female
27.7
Hippocampal formation nTPM: 50.4
Samples: 4
Max nTPM: 61.5
Min nTPM: 39.0
Sample A
Male
39.8
Sample B
Male
39.0
Sample C
Female
61.5
Sample D
Female
61.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.