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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.3
nTPM
Monaco:
16.0
nTPM
Schmiedel:
49.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.3
HPA sample
nTPM
gdT-cell nTPM: 7.9
Samples: 6
Max nTPM: 9.6
Min nTPM: 3.3
P10809_1007
8.8
P10809_1022
3.3
P10809_1041
7.2
P10809_1060
9.0
P10809_1077
9.2
P10809_1098
9.6
MAIT T-cell nTPM: 11.1
Samples: 6
Max nTPM: 19.4
Min nTPM: 4.6
P10809_1006
10.8
P10809_1024
4.6
P10809_1043
8.3
P10809_1062
13.4
P10809_1083
19.4
P10809_1097
9.9
Memory CD4 T-cell nTPM: 10.0
Samples: 6
Max nTPM: 14.4
Min nTPM: 5.0
P10809_1014
9.0
P10809_1026
7.3
P10809_1045
5.0
P10809_1064
14.4
P10809_1086
13.1
P10809_1113
11.0
Memory CD8 T-cell nTPM: 8.3
Samples: 5
Max nTPM: 12.9
Min nTPM: 4.0
P10809_1012
11.4
P10809_1027
5.0
P10809_1046
4.0
P10809_1065
12.9
P10809_1111
8.1
Naive CD4 T-cell nTPM: 10.2
Samples: 6
Max nTPM: 14.9
Min nTPM: 4.1
P10809_1015
14.9
P10809_1030
7.1
P10809_1049
4.1
P10809_1068
12.6
P10809_1085
14.2
P10809_1112
8.0
Naive CD8 T-cell nTPM: 10.9
Samples: 6
Max nTPM: 18.2
Min nTPM: 8.1
P10809_1016
10.0
P10809_1031
8.9
P10809_1050
8.1
P10809_1069
11.3
P10809_1087
18.2
P10809_1110
8.7
T-reg nTPM: 11.3
Samples: 6
Max nTPM: 17.7
Min nTPM: 5.7
P10809_1018
17.7
P10809_1037
5.7
P10809_1056
12.1
P10809_1075
13.4
P10809_1094
9.9
P10809_1106
9.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.0
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 14.1
Samples: 4
Max nTPM: 20.7
Min nTPM: 9.7
RHH5202_R3573
20.7
RHH5230_R3602
16.0
RHH5259_R3631
9.7
RHH5288_R3660
10.0
Effector memory CD8 T-cell nTPM: 9.9
Samples: 4
Max nTPM: 12.6
Min nTPM: 5.9
RHH5203_R3574
5.9
RHH5231_R3603
10.5
RHH5260_R3632
10.4
RHH5289_R3661
12.6
MAIT T-cell nTPM: 10.5
Samples: 4
Max nTPM: 12.9
Min nTPM: 8.7
RHH5233_R3605
8.7
RHH5205_R3576
9.6
RHH5262_R3634
10.9
RHH5297_R3663
12.9
Memory CD4 T-cell TFH nTPM: 12.4
Samples: 4
Max nTPM: 16.9
Min nTPM: 4.2
RHH5300_R3666
12.3
RHH5236_R3608
4.2
RHH5265_R3637
16.9
RHH5208_R3579
16.3
Memory CD4 T-cell Th1 nTPM: 12.0
Samples: 4
Max nTPM: 17.1
Min nTPM: 8.5
RHH5210_R3581
17.1
RHH5302_R3668
8.5
RHH5238_R3610
13.3
RHH5267_R3639
9.1
Memory CD4 T-cell Th1/Th17 nTPM: 12.8
Samples: 4
Max nTPM: 21.9
Min nTPM: 8.0
RHH5303_R3669
8.5
RHH5211_R3582
8.0
RHH5239_R3611
12.6
RHH5268_R3640
21.9
Memory CD4 T-cell Th17 nTPM: 14.6
Samples: 4
Max nTPM: 33.2
Min nTPM: 5.2
RHH5304_R3670
9.7
RHH5212_R3583
10.2
RHH5240_R3612
5.2
RHH5269_R3641
33.2
Memory CD4 T-cell Th2 nTPM: 11.4
Samples: 4
Max nTPM: 18.9
Min nTPM: 8.8
RHH5305_R3671
9.0
RHH5213_R3584
9.0
RHH5241_R3613
8.8
RHH5270_R3642
18.9
Naive CD4 T-cell nTPM: 13.2
Samples: 4
Max nTPM: 18.2
Min nTPM: 10.1
RHH5306_R3672
13.3
RHH5214_R3585
18.2
RHH5242_R3614
11.3
RHH5271_R3643
10.1
Naive CD8 T-cell nTPM: 16.0
Samples: 4
Max nTPM: 21.4
Min nTPM: 12.2
RHH5201_R3572
16.6
RHH5229_R3601
21.4
RHH5258_R3630
13.6
RHH5287_R3659
12.2
Non-Vd2 gdTCR nTPM: 9.9
Samples: 4
Max nTPM: 14.1
Min nTPM: 4.4
RHH5235_R3607
14.1
RHH5264_R3636
4.4
RHH5207_R3578
9.8
RHH5299_R3665
11.3
T-reg nTPM: 14.2
Samples: 4
Max nTPM: 19.9
Min nTPM: 7.9
RHH5301_R3667
15.8
RHH5237_R3609
7.9
RHH5266_R3638
19.9
RHH5209_R3580
13.0
Terminal effector memory CD4 T-cell nTPM: 12.0
Samples: 2
Max nTPM: 13.3
Min nTPM: 10.6
RHH5243_R3615
13.3
RHH5272_R3644
10.6
Terminal effector memory CD8 T-cell nTPM: 14.0
Samples: 4
Max nTPM: 21.1
Min nTPM: 8.1
RHH5232_R3604
8.1
RHH5204_R3575
21.1
RHH5261_R3633
13.7
RHH5296_R3662
13.1
Vd2 gdTCR nTPM: 14.1
Samples: 4
Max nTPM: 19.4
Min nTPM: 10.3
RHH5234_R3606
10.3
RHH5206_R3577
13.2
RHH5263_R3635
19.4
RHH5298_R3664
13.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
