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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Inner nuclear layer:
Low
Photoreceptor cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
111.4
nTPM
GTEx:
111.4
nTPM
FANTOM5:
79.8
Scaled Tags Per Million
Pig:
225.5
nTPM
Mouse:
191.4
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB001979
Pigment epithelial cells
Not detected
Immunohistochemical staining of human retina shows strong positivity in rods.
50 ฮผm
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Low
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA042434
Pigment epithelial cells
Not detected
Immunohistochemical staining of human retina shows strong positivity in rods.
100 ฮผm
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Low
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
111.4
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 111.4
Samples: 105
Max nTPM: 199.9
Min nTPM: 50.6
Std nTPM: 27.9
Median nTPM:
415_1
77 years, female
199.9
172_1
72 years, female
186.8
237_1
82 years, male
178.5
490_1
67 years, female
170.2
229_1
69 years, female
165.6
352_1
62 years, male
163.0
425_1
59 years, female
155.5
266_1
85 years, male
155.2
35_1
74 years, female
148.8
375_1
74 years, female
148.2
347_1
72 years, male
143.8
217_1
76 years, male
142.3
218_1
71 years, female
141.2
99_1
64 years, male
140.5
177_1
74 years, male
136.6
335_1
73 years, female
135.8
405_1
91 years, male
135.7
468_1
89 years, male
134.9
9_1
66 years, female
131.2
163_1
78 years, male
131.2
495_1
57 years, female
130.2
466_1
57 years, female
129.9
414_1
84 years, female
129.6
117_1
61 years, male
129.4
32_1
67 years, male
129.1
355_1
70 years, female
128.6
6_1
73 years, female
128.4
286_1
68 years, female
127.0
316_1
62 years, male
126.9
386_1
76 years, male
126.0
243_1
75 years, male
125.1
324_1
76 years, male
125.1
480_1
63 years, male
124.8
246_1
77 years, male
124.7
137_1
83 years, male
123.1
389_1
86 years, female
122.9
447_1
81 years, male
120.5
81_1
67 years, male
120.1
350_1
84 years, female
119.2
251_1
78 years, male
118.5
526_1
61 years, male
118.1
142_1
61 years, female
117.2
518_1
75 years, female
116.9
115_1
83 years, male
116.0
499_1
55 years, female
115.6
126_1
63 years, male
115.4
406_1
79 years, male
115.0
353_1
82 years, female
114.7
265_1
87 years, male
113.9
376_1
75 years, female
112.9
162_1
79 years, female
112.5
377_1
82 years, female
112.2
42_1
85 years, male
111.5
503_1
68 years, male
111.4
321_1
62 years, female
111.0
43_1
64 years, female
109.9
292_1
71 years, male
109.5
354_1
81 years, female
108.7
319_1
81 years, male
108.6
145_1
84 years, male
107.7
404_1
82 years, female
107.2
307_1
66 years, female
106.4
318_1
68 years, male
105.4
349_1
83 years, male
104.3
313_1
79 years, female
103.0
311_1
78 years, male
102.0
18_1
88 years, male
101.8
189_1
76 years, male
99.2
394_1
75 years, female
98.2
379_1
60 years, male
96.8
348_1
84 years, male
96.2
413_1
59 years, female
96.1
396_1
62 years, male
95.4
491_1
89 years, female
94.4
293_1
68 years, female
94.3
153_1
70 years, female
93.4
320_1
89 years, female
93.4
149_1
88 years, male
92.1
517_1
88 years, male
91.9
384_1
83 years, male
91.5
322_1
76 years, male
90.6
315_1
62 years, female
89.9
356_1
87 years, female
89.8
254_1
77 years, female
88.9
291_1
76 years, male
87.5
173_1
67 years, male
86.9
109_1
81 years, female
86.8
2_1
77 years, female
86.1
119_1
70 years, female
85.4
351_1
91 years, male
83.1
264_1
73 years, female
81.9
317_1
60 years, male
81.8
308_1
70 years, female
76.3
89_1
63 years, male
75.0
17_1
71 years, male
74.5
288_1
66 years, female
74.3
501_1
88 years, male
72.3
314_1
67 years, male
72.0
139_1
64 years, female
68.9
506_1
65 years, male
68.4
4_1
88 years, female
67.0
120_1
70 years, female
65.8
41_1
94 years, female
64.8
295_1
61 years, female
50.7
452_1
88 years, female
50.6
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.