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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
2.6
nTPM
HPA Brain:
35.6
nTPM
GTEx:
2.6
nTPM
FANTOM5:
2.5
Scaled Tags Per Million
Pig:
16.2
nTPM
Mouse:
10.5
nTPM
Allen mouse:
3.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 24.0
2586
Male, age 75, left hemisphere
34.7
1827
Male, age 72, unknown
28.1
2219
Male, age 76, both hemispheres
25.3
2019
Male, age 18, unknown
25.0
2828
Female, age 72, unknown
24.5
2666
Male, age 74, left hemisphere
23.0
1833
Male, age 53, unknown
22.2
2411
Female, age 72, unknown
20.4
1830
Male, age 51, unknown
19.3
1870
Female, age 42, unknown
17.8
Dorsal raphe nucleus nTPM: 22.5
2298
Female, age 72, unknown
28.1
2047
Male, age 72, unknown
24.7
2016
Female, age 72, unknown
20.6
1828
Male, age 53, unknown
19.8
2750
Male, age 76, both hemispheres
19.2
Inferior colliculus nTPM: 28.1
2097
Female, age 72, unknown
31.2
2849
Male, age 72, unknown
29.5
1890
Male, age 53, unknown
26.1
1848
Female, age 42, unknown
25.7
Median raphe nucleus nTPM: 28.9
2220
Male, age 76, midline
28.9
Periaquaductal grey, anterior nTPM: 35.6
2502
Female, age 75, unknown
45.2
1795
Male, age 51, unknown
33.7
1947
Male, age 18, unknown
27.9
Periaquaductal grey, dorsal nTPM: 31.0
1840
Male, age 53, unknown
41.8
1831
Male, age 72, unknown
29.6
2850
Male, age 76, both hemispheres
29.1
2464
Female, age 72, unknown
23.3
Periaquaductal grey, lateral nTPM: 26.6
2140
Male, age 76, both hemispheres
29.7
2272
Male, age 74, both hemispheres
26.7
2053
Male, age 18, unknown
23.3
Pretectal area nTPM: 33.7
2007
Male, age 72, unknown
43.3
1816
Male, age 51, unknown
42.0
1815
Male, age 53, unknown
40.5
1817
Female, age 42, unknown
37.7
1944
Female, age 72, unknown
37.7
2667
Female, age 75, unknown
37.6
2407
Male, age 75, both hemispheres
28.8
2224
Female, age 72, unknown
26.5
2273
Male, age 74, both hemispheres
26.5
2316
Male, age 76, right hemisphere
25.8
2825
Male, age 18, unknown
23.9
Red nucleus nTPM: 15.5
2785
Male, age 18, unknown
31.2
2588
Male, age 74, left hemisphere
22.7
2584
Male, age 75, left hemisphere
19.4
2769
Male, age 72, unknown
14.2
1904
Male, age 53, unknown
13.8
1954
Female, age 42, unknown
13.7
2725
Female, age 75, unknown
12.5
1821
Female, age 72, unknown
12.4
2227
Male, age 72, unknown
12.0
2503
Female, age 72, unknown
11.8
1865
Male, age 51, unknown
11.5
2823
Male, age 76, right hemisphere
11.1
Substantia nigra nTPM: 27.9
2665
Male, age 74, both hemispheres
41.2
1916
Female, age 42, unknown
36.2
1889
Female, age 72, unknown
33.9
1851
Male, age 51, unknown
29.7
2583
Male, age 75, right hemisphere
28.8
2241
Male, age 72, unknown
24.5
2590
Female, age 75, unknown
22.6
2699
Male, age 18, unknown
22.4
1941
Male, age 53, unknown
21.9
2409
Female, age 72, unknown
18.2
Superior colliculus nTPM: 27.8
2664
Male, age 75, both hemispheres
40.4
1796
Male, age 53, unknown
36.9
1839
Male, age 51, unknown
29.4
2261
Male, age 18, unknown
28.9
1895
Male, age 76, right hemisphere
27.6
2668
Female, age 75, unknown
25.7
2087
Female, age 72, unknown
25.5
2587
Male, age 74, left hemisphere
21.4
1995
Male, age 72, unknown
21.3
1913
Female, age 42, unknown
20.4
Ventral tegmental area nTPM: 26.4
2218
Male, age 76, both hemispheres
32.1
1915
Female, age 42, unknown
28.2
1942
Male, age 51, unknown
27.7
2410
Female, age 72, unknown
26.4
2223
Female, age 72, unknown
25.0
2021
Male, age 53, unknown
19.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 2.6
Samples: 139
Max nTPM: 6.9
Min nTPM: 0.4
Std nTPM: 1.3
Median nTPM: 2.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
6.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
6.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
5.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
5.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
5.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
5.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
5.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
5.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
5.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
5.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
4.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
4.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
4.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
4.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
4.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
4.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
4.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
4.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
4.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
4.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
3.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
3.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
3.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
3.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
3.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
3.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
3.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
3.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
3.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
3.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
3.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
3.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
3.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
3.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
3.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
3.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
3.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
3.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
3.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
3.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
3.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
3.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
3.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
3.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
3.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
3.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
3.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
3.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
3.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
3.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
3.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
3.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
2.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
2.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
2.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
2.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
2.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
2.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
2.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
2.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
2.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
2.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
2.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
2.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
2.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
2.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
2.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
2.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
2.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
2.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
2.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
2.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
2.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
2.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
2.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
2.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
2.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
2.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
2.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
2.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
2.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
2.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
2.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
2.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
1.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
1.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
1.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
1.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
0.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
0.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
0.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
0.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
0.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
0.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
0.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
0.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
0.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 10.5
Samples: 4
Max nTPM: 12.0
Min nTPM: 8.3
Sample A
Male
8.3
Sample B
Male
10.7
Sample C
Female
12.0
Sample D
Female
11.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.