We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.6
Sample id
Sample description
nTPM
Amygdala nTPM: 21.6
2695
Female, age 67, right hemisphere
33.1
2814
Male, age 76, right hemisphere
22.9
2514
Male, age 75, right hemisphere
19.7
1987
Female, age 91, left hemisphere
17.4
2517
Female, age 94, left hemisphere
14.9
Basal amygdala nTPM: 15.1
2827
Female, age 67, right hemisphere
19.9
1955
Male, age 76, both hemispheres
17.8
2110
Male, age 80, left hemisphere
15.6
2609
Male, age 75, right hemisphere
15.4
2243
Female, age 91, right hemisphere
11.9
2685
Female, age 94, left hemisphere
10.1
Central amygdala nTPM: 20.0
2826
Female, age 94, left hemisphere
24.4
1905
Male, age 76, both hemispheres
22.7
2515
Male, age 75, right hemisphere
21.8
2701
Female, age 91, right hemisphere
19.2
2239
Male, age 80, left hemisphere
11.9
Corticomedial amygdala nTPM: 13.3
2428
Male, age 75, right hemisphere
18.3
2240
Male, age 76, both hemispheres
17.4
2242
Female, age 91, right hemisphere
12.5
2535
Female, age 67, right hemisphere
12.1
2429
Female, age 94, left hemisphere
10.6
2829
Male, age 80, left hemisphere
9.1
Lateral amygdala nTPM: 18.3
2830
Female, age 67, right hemisphere
24.1
2516
Male, age 75, right hemisphere
21.2
1883
Male, age 76, both hemispheres
20.1
2534
Female, age 94, left hemisphere
19.4
2255
Female, age 91, right hemisphere
13.0
2256
Male, age 80, left hemisphere
12.2
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 20.3
Samples: 152
Max nTPM: 422.9
Min nTPM: 4.5
Std nTPM: 35.3
Median nTPM: 14.7
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
422.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
133.3
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
80.3
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
64.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
41.3
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
37.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
35.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
34.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
31.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
30.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
30.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
28.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
27.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
26.8
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
26.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
26.6
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
26.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
26.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
25.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
25.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
24.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
24.9
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
24.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
24.4
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
24.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
23.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
22.1
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
21.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
21.7
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
21.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
21.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
20.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
20.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
20.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
20.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
20.3
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
20.3
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
20.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
20.1
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
20.1
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
20.0
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
19.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
19.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
19.1
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
19.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
19.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
18.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
18.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
18.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
18.2
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
18.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
17.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
17.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
17.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
17.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
17.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
16.7
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
16.5
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
16.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
16.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
16.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
16.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
16.3
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
16.2
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
15.9
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
15.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
15.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
15.5
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
15.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
15.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
15.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
15.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
15.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
14.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
14.8
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
14.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
14.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
14.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
14.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
14.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
14.2
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
14.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
13.9
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
13.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
13.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
13.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
13.4
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
13.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
13.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
13.3
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
13.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
13.0
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
13.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
12.8
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
12.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
12.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
12.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
12.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
12.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
12.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
12.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
12.5
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
12.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
12.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
12.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
12.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
12.1
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
12.1
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
12.0
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
12.0
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
11.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
11.9
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
11.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
11.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
11.7
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
11.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
11.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
11.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
11.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
11.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
11.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
10.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
10.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
10.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
10.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
10.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
10.2
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
10.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
10.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
10.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
10.0
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
10.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
9.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
9.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
9.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
9.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
9.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
9.4
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
9.4
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
9.1
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
9.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
8.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
8.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
8.5
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
8.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
8.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
8.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
7.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
7.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
6.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
6.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
4.5
Show allShow less
AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 0.6
Samples: 4
Max nTPM: 0.9
Min nTPM: 0.4
Sample A
Male
0.4
Sample B
Male
0.9
Sample C
Female
0.6
Sample D
Female
0.5
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.