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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
31.6
nTPM
HPA Brain:
73.6
nTPM
GTEx:
31.6
nTPM
FANTOM5:
126.2
Scaled Tags Per Million
Pig:
15.3
nTPM
Mouse:
21.5
nTPM
Allen mouse:
0.6
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
73.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 63.5
2666
Male, age 74, left hemisphere
93.5
1827
Male, age 72, unknown
74.4
2828
Female, age 72, unknown
71.2
2586
Male, age 75, left hemisphere
71.1
2019
Male, age 18, unknown
67.1
1833
Male, age 53, unknown
59.6
1870
Female, age 42, unknown
59.1
1830
Male, age 51, unknown
55.6
2411
Female, age 72, unknown
45.2
2219
Male, age 76, both hemispheres
38.5
Dorsal raphe nucleus nTPM: 54.1
2750
Male, age 76, both hemispheres
60.2
2298
Female, age 72, unknown
57.8
1828
Male, age 53, unknown
55.2
2047
Male, age 72, unknown
53.4
2016
Female, age 72, unknown
44.0
Inferior colliculus nTPM: 71.7
1848
Female, age 42, unknown
82.4
2849
Male, age 72, unknown
69.9
1890
Male, age 53, unknown
68.5
2097
Female, age 72, unknown
66.1
Median raphe nucleus nTPM: 58.8
2220
Male, age 76, midline
58.8
Periaquaductal grey, anterior nTPM: 69.3
1795
Male, age 51, unknown
72.7
1947
Male, age 18, unknown
68.6
2502
Female, age 75, unknown
66.6
Periaquaductal grey, dorsal nTPM: 60.7
2850
Male, age 76, both hemispheres
72.5
1831
Male, age 72, unknown
63.9
1840
Male, age 53, unknown
54.7
2464
Female, age 72, unknown
51.9
Periaquaductal grey, lateral nTPM: 72.4
2140
Male, age 76, both hemispheres
73.9
2272
Male, age 74, both hemispheres
71.9
2053
Male, age 18, unknown
71.5
Pretectal area nTPM: 73.6
1816
Male, age 51, unknown
110.9
1944
Female, age 72, unknown
87.0
1817
Female, age 42, unknown
86.2
2007
Male, age 72, unknown
83.1
2316
Male, age 76, right hemisphere
77.7
1815
Male, age 53, unknown
74.8
2825
Male, age 18, unknown
64.2
2273
Male, age 74, both hemispheres
61.1
2407
Male, age 75, both hemispheres
58.4
2667
Female, age 75, unknown
55.1
2224
Female, age 72, unknown
50.8
Red nucleus nTPM: 64.5
2584
Male, age 75, left hemisphere
88.6
2588
Male, age 74, left hemisphere
77.3
1904
Male, age 53, unknown
71.8
2725
Female, age 75, unknown
70.9
2785
Male, age 18, unknown
63.5
2503
Female, age 72, unknown
62.4
1821
Female, age 72, unknown
60.2
1954
Female, age 42, unknown
59.4
2769
Male, age 72, unknown
57.6
2823
Male, age 76, right hemisphere
56.6
2227
Male, age 72, unknown
54.2
1865
Male, age 51, unknown
51.8
Substantia nigra nTPM: 65.4
2665
Male, age 74, both hemispheres
125.0
2590
Female, age 75, unknown
73.4
2583
Male, age 75, right hemisphere
72.8
1889
Female, age 72, unknown
64.9
1851
Male, age 51, unknown
57.0
2241
Male, age 72, unknown
56.9
2699
Male, age 18, unknown
52.0
1916
Female, age 42, unknown
51.4
1941
Male, age 53, unknown
50.5
2409
Female, age 72, unknown
49.9
Superior colliculus nTPM: 73.0
2261
Male, age 18, unknown
91.8
2087
Female, age 72, unknown
86.2
2587
Male, age 74, left hemisphere
83.4
1796
Male, age 53, unknown
81.7
2668
Female, age 75, unknown
74.9
1995
Male, age 72, unknown
72.1
1839
Male, age 51, unknown
67.6
1913
Female, age 42, unknown
64.7
1895
Male, age 76, right hemisphere
54.9
2664
Male, age 75, both hemispheres
52.7
Ventral tegmental area nTPM: 62.8
2218
Male, age 76, both hemispheres
74.3
2021
Male, age 53, unknown
67.4
2223
Female, age 72, unknown
64.9
1942
Male, age 51, unknown
61.5
2410
Female, age 72, unknown
56.2
1915
Female, age 42, unknown
52.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 31.6
Samples: 139
Max nTPM: 160.3
Min nTPM: 11.1
Std nTPM: 21.2
Median nTPM: 26.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
160.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
118.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
116.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
97.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
78.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
77.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
77.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
69.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
68.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
61.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
54.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
53.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
50.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
50.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
49.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
48.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
47.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
47.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
46.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
45.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
44.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
44.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
43.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
43.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
43.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
42.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
42.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
40.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
40.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
37.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
37.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
37.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
36.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
36.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
36.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
35.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
34.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
34.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
34.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
34.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
33.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
33.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
32.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
32.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
32.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
32.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
32.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
32.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
31.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
30.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
30.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
30.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
29.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
29.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
29.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
28.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
28.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
28.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
28.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
28.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
28.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
28.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
27.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
27.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
27.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
27.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
26.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
26.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
26.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
26.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
26.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
26.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
25.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
25.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
25.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
24.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
24.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
24.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
24.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
23.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
22.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
22.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
22.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
22.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
22.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
21.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
21.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
21.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
21.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
21.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
20.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
20.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
20.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
20.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
20.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
20.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
19.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
19.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
19.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
19.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
19.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
19.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
19.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
19.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
18.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
18.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
18.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
18.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
18.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
18.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
18.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
17.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
17.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
17.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
17.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
17.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
17.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
16.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
16.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
16.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
16.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
16.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
16.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
15.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
15.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
15.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
15.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
15.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
14.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
14.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
14.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
13.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
13.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
13.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
13.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
13.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
11.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
11.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
11.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 21.5
Samples: 4
Max nTPM: 22.9
Min nTPM: 20.1
Sample A
Male
20.1
Sample B
Male
22.0
Sample C
Female
22.9
Sample D
Female
20.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.