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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
29.7
nTPM
HPA Brain:
99.5
nTPM
GTEx:
29.7
nTPM
FANTOM5:
0.3
Scaled Tags Per Million
Pig:
142.7
nTPM
Mouse:
114.1
nTPM
Allen mouse:
3.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
99.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 27.3
2219
Male, age 76, both hemispheres
75.4
1827
Male, age 72, unknown
41.4
2411
Female, age 72, unknown
39.4
1870
Female, age 42, unknown
28.7
1833
Male, age 53, unknown
25.8
1830
Male, age 51, unknown
23.7
2586
Male, age 75, left hemisphere
16.9
2666
Male, age 74, left hemisphere
15.7
2828
Female, age 72, unknown
4.5
2019
Male, age 18, unknown
1.7
Dorsal raphe nucleus nTPM: 99.5
2047
Male, age 72, unknown
274.1
2298
Female, age 72, unknown
107.5
2750
Male, age 76, both hemispheres
75.1
2016
Female, age 72, unknown
24.3
1828
Male, age 53, unknown
16.8
Inferior colliculus nTPM: 18.1
2849
Male, age 72, unknown
34.2
1848
Female, age 42, unknown
13.1
1890
Male, age 53, unknown
12.6
2097
Female, age 72, unknown
12.6
Median raphe nucleus nTPM: 93.6
2220
Male, age 76, midline
93.6
Periaquaductal grey, anterior nTPM: 13.7
2502
Female, age 75, unknown
23.8
1947
Male, age 18, unknown
9.1
1795
Male, age 51, unknown
8.0
Periaquaductal grey, dorsal nTPM: 56.3
2464
Female, age 72, unknown
82.9
1840
Male, age 53, unknown
68.0
2850
Male, age 76, both hemispheres
65.8
1831
Male, age 72, unknown
8.5
Periaquaductal grey, lateral nTPM: 32.1
2140
Male, age 76, both hemispheres
44.1
2053
Male, age 18, unknown
33.5
2272
Male, age 74, both hemispheres
18.7
Pretectal area nTPM: 36.1
2825
Male, age 18, unknown
177.6
2224
Female, age 72, unknown
146.9
2667
Female, age 75, unknown
26.8
2273
Male, age 74, both hemispheres
11.9
1816
Male, age 51, unknown
11.7
2407
Male, age 75, both hemispheres
7.2
2316
Male, age 76, right hemisphere
5.3
1815
Male, age 53, unknown
4.4
1944
Female, age 72, unknown
2.6
2007
Male, age 72, unknown
1.6
1817
Female, age 42, unknown
0.8
Red nucleus nTPM: 29.5
2584
Male, age 75, left hemisphere
128.2
1954
Female, age 42, unknown
68.6
2823
Male, age 76, right hemisphere
38.5
1904
Male, age 53, unknown
25.2
2227
Male, age 72, unknown
20.8
2769
Male, age 72, unknown
19.8
2588
Male, age 74, left hemisphere
11.6
1821
Female, age 72, unknown
11.4
1865
Male, age 51, unknown
9.9
2503
Female, age 72, unknown
9.4
2725
Female, age 75, unknown
8.5
2785
Male, age 18, unknown
2.0
Substantia nigra nTPM: 9.4
2241
Male, age 72, unknown
17.0
1851
Male, age 51, unknown
15.2
2699
Male, age 18, unknown
15.1
1889
Female, age 72, unknown
15.0
2583
Male, age 75, right hemisphere
7.3
2665
Male, age 74, both hemispheres
6.9
2590
Female, age 75, unknown
6.6
1941
Male, age 53, unknown
5.8
1916
Female, age 42, unknown
4.4
2409
Female, age 72, unknown
1.0
Superior colliculus nTPM: 15.0
1796
Male, age 53, unknown
28.9
2261
Male, age 18, unknown
25.7
1839
Male, age 51, unknown
24.1
2587
Male, age 74, left hemisphere
19.4
1913
Female, age 42, unknown
15.5
2664
Male, age 75, both hemispheres
12.9
2087
Female, age 72, unknown
7.0
2668
Female, age 75, unknown
6.0
1895
Male, age 76, right hemisphere
5.8
1995
Male, age 72, unknown
4.8
Ventral tegmental area nTPM: 76.6
2218
Male, age 76, both hemispheres
151.7
2021
Male, age 53, unknown
125.9
2223
Female, age 72, unknown
77.6
1915
Female, age 42, unknown
49.1
1942
Male, age 51, unknown
34.2
2410
Female, age 72, unknown
21.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 29.7
Samples: 139
Max nTPM: 361.5
Min nTPM: 0.0
Std nTPM: 53.5
Median nTPM: 9.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
361.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
324.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
223.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
196.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
164.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
152.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
149.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
111.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
108.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
87.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
85.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
84.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
80.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
71.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
64.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
62.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
59.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
58.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
57.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
54.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
51.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
51.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
50.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
50.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
49.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
49.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
47.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
46.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
45.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
43.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
41.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
41.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
39.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
38.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
35.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
34.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
28.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
27.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
26.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
23.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
23.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
23.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
23.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
22.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
22.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
21.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
20.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
20.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
18.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
18.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
18.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
17.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
17.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
17.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
16.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
16.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
16.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
15.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
15.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
15.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
15.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
15.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
15.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
14.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
14.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
12.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
12.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
11.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
9.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
9.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
8.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
8.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
8.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
8.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
7.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
7.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
7.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
7.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
6.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
6.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
6.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
6.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
6.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
6.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
6.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
6.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
5.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
5.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
5.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
5.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
4.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
4.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
4.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
4.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
4.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
4.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
4.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
3.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
3.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
3.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
3.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
3.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
3.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
2.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
2.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
2.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
2.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
2.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
2.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
1.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
0.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
0.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
0.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
0.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
0.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
0.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
0.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
0.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
0.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
0.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
0.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
114.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 114.1
Samples: 4
Max nTPM: 129.7
Min nTPM: 94.1
Sample A
Male
129.7
Sample B
Male
114.3
Sample C
Female
94.1
Sample D
Female
118.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.