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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
94.6
nTPM
HPA Brain:
62.3
nTPM
GTEx:
94.6
nTPM
FANTOM5:
124.4
Scaled Tags Per Million
Pig:
406.5
nTPM
Mouse:
334.5
nTPM
Allen mouse:
4.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
62.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 27.0
1855
Male, age 76, left hemisphere
48.9
2621
Female, age 67, right hemisphere
44.4
1911
Female, age 85, right hemisphere
24.8
2529
Female, age 94, left hemisphere
19.9
1898
Male, age 80, left hemisphere
17.3
2148
Female, age 91, left hemisphere
6.5
Dentate gyrus nTPM: 33.0
2010
Male, age 76, both hemispheres
99.1
2246
Female, age 85, both hemispheres
32.9
1927
Female, age 91, both hemispheres
31.1
2530
Female, age 94, left hemisphere
15.5
2531
Female, age 67, both hemispheres
10.1
2528
Male, age 74, both hemispheres
9.3
Entorhinal gyrus nTPM: 47.6
1787
Male, age 76, left hemisphere
107.3
2764
Male, age 80, right hemisphere
59.6
2613
Female, age 94, left hemisphere
50.6
1938
Female, age 85, left hemisphere
29.1
2686
Male, age 75, right hemisphere
25.3
2117
Female, age 91, right hemisphere
13.4
Hippocampus, CA1 nTPM: 27.7
2045
Male, age 76, both hemispheres
57.6
2082
Female, age 91, right hemisphere
24.0
2749
Male, age 80, left hemisphere
23.5
1873
Female, age 85, both hemispheres
18.9
2527
Male, age 74, both hemispheres
14.5
Hippocampus, CA2 nTPM: 26.4
1892
Male, age 76, both hemispheres
72.0
1940
Female, age 85, left hemisphere
27.6
2113
Female, age 91, right hemisphere
18.5
2437
Female, age 94, left hemisphere
16.8
2249
Male, age 74, both hemispheres
12.8
1963
Male, age 80, left hemisphere
10.9
Hippocampus, CA3 nTPM: 15.5
1867
Male, age 76, both hemispheres
27.3
1891
Female, age 85, both hemispheres
17.8
2436
Male, age 74, both hemispheres
16.5
2861
Female, age 67, both hemispheres
14.2
2137
Male, age 80, left hemisphere
9.9
2620
Female, age 94, left hemisphere
7.1
Parahippocampal cortex nTPM: 49.5
2532
Female, age 72, left hemisphere
100.4
2250
Female, age 67, right hemisphere
96.3
1990
Female, age 91, right hemisphere
72.8
2245
Female, age 91, both hemispheres
60.1
1850
Male, age 80, both hemispheres
34.8
2622
Female, age 67, right hemisphere
29.8
1933
Female, age 85, both hemispheres
28.6
2693
Female, age 94, both hemispheres
27.1
2018
Male, age 76, both hemispheres
26.1
2692
Male, age 74, both hemispheres
19.2
Perirhinal gyrus nTPM: 62.3
2848
Male, age 76, right hemisphere
101.0
1847
Female, age 91, left hemisphere
98.3
2521
Female, age 94, right hemisphere
49.5
1794
Male, age 80, right hemisphere
39.7
1841
Female, age 85, right hemisphere
22.8
Subiculum nTPM: 25.8
2042
Male, age 76, both hemispheres
44.8
2438
Female, age 94, left hemisphere
29.6
1977
Female, age 85, both hemispheres
28.5
1901
Male, age 80, both hemispheres
23.0
2619
Male, age 74, both hemispheres
23.0
2729
Female, age 91, right hemisphere
5.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
94.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 94.6
Samples: 197
Max nTPM: 656.6
Min nTPM: 1.4
Std nTPM: 99.1
Median nTPM: 62.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
656.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
460.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
447.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
393.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
377.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
371.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
318.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
315.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
311.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
298.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
281.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
270.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
268.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
265.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
258.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
255.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
253.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
249.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
236.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
227.6
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
224.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
216.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
214.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
209.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
208.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
205.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
185.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
183.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
181.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
174.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
173.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
172.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
171.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
168.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
161.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
160.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
158.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
156.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
154.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
148.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
142.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
142.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
138.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
137.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
131.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
130.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
129.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
129.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
128.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
124.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
124.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
121.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
120.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
118.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
117.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
117.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
115.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
115.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
113.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
112.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
112.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
111.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
110.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
106.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
103.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
99.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
98.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
98.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
98.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
92.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
92.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
91.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
88.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
88.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
88.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
86.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
86.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
82.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
81.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
78.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
78.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
78.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
78.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
77.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
76.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
75.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
74.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
73.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
73.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
72.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
70.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
70.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
69.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
68.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
66.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
65.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
63.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
62.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
62.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
62.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
61.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
61.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
61.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
60.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
57.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
55.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
55.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
55.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
54.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
53.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
52.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
51.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
50.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
50.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
50.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
49.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
48.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
48.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
47.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
46.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
45.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
44.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
42.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
42.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
42.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
40.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
37.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
37.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
36.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
35.6
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
35.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
34.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
34.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
34.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
33.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
33.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
33.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
33.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
32.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
31.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
31.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
29.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
29.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
28.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
27.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
27.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
26.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
25.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
25.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
24.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
23.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
22.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
22.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
21.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
21.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
20.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
20.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
19.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
19.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
18.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
17.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
17.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
17.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
16.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
16.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
16.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
16.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
15.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
14.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
14.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
13.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
13.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
12.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
11.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
11.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
10.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
9.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
9.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
8.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
8.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
8.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
8.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
7.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
7.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
6.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
6.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
6.1
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
6.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
6.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
5.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
5.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
4.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
3.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
2.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
2.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
1.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
1.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
334.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 334.5
Samples: 4
Max nTPM: 349.5
Min nTPM: 315.6
Sample A
Male
332.7
Sample B
Male
349.5
Sample C
Female
340.2
Sample D
Female
315.6
Hippocampal formation nTPM: 322.3
Samples: 4
Max nTPM: 366.1
Min nTPM: 224.6
Sample A
Male
353.6
Sample B
Male
345.0
Sample C
Female
224.6
Sample D
Female
366.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.